{The Satellite Meeting will NOT be Webcast}
Organizers: Mike Hucka, James Sluka, and Herbert Sauro
Meeting intentions: MSM encompasses a large constellation of topics and technical approaches. Modelers make use of a variety of software tools and model representation formats in their research. This satellite workshop has 3 goals: (1) overview common formalisms and approaches, to establish context; (2) describe a subset of formats and standards relevant to MSM; and (3) demonstrate how they are used in actual software.
Agenda:
| Time | Topic | Speaker | Files |
|---|---|---|---|
| 08:50-08:55 | Welcome | Mike Hucka | Slides |
| 08:55-09:25 | Overview of popular modeling formalisms and representation approaches | Mike Hucka | Slides |
| 09:25-10:05 | SBML, SBML Packages, SED-ML, COMBINE Archive, and more | Mike Hucka | Slides |
| 10:05-10:30 | -- Break -- | ||
| 10:30-10:45 | Integration of SBML in NEURON | Anna Bulanova | Slides |
| 10:45-11:10 | Anatomy of Finite Element Analysis in Biomechanics | Ahmet Erdemir | |
| 11:10-11:45 | Using standards to enable model reproducibility: Software demonstrations | Herbert Sauro | |
| 11:45-12:15 | Multiscale models in CompuCell3D | James Sluka | |
| 12:15-12:45 | Models and simulations as a service using Galaxy | Mark Walker | |
| 12:45-14:00 | -- Lunch -- | ||
| 14:00-15:00 | Annotating models: practical experiences and approaches | James Sluka | |
| 15:00-15:15 | -- Break -- | ||
| 15:15-16:00 | Discussion and software demos of model reuse and reproducibility |
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