TMM - Theories, Models and Methods (R01 awards)

For more details, see complete wiki page, https://www.imagwiki.nibib.nih.gov/working-groups/brain-initiative-theo…

PI Name(s) All	Title	Grant #
BROWN, EMERY N	Filtered Point Process Inference Framework for Modeling Neural Data	EB022726
CARLSON, DAVID E	Uncovering Population-Level Cellular Relationships to Behavior via Mesoscale Networks	EB026937
CHING, SHINUNG (contact); SNYDER, LAWRENCE H	Efficient resource allocation and information retention in working memory circuits	EB028154
CHUNG, MOO K	BRAIN Initiative: Theories, Models and Methods for Analysis of Complex Data from the Brain	EB022856
CURTO, CARINA	Emergent dynamics from network connectivity: a minimal model	EB022862
DAVID, STEPHEN V (contact); MESGARANI, NIMA	Tools for modeling state-dependent sensory encoding by neural populations across spatial and temporal scales	EB028155
DOIRON, BRENT D (contact); SMITH, MATTHEW A; YU, BYRON M	Neuronal population dynamics within and across cortical areas	EB026953
DRUCKMANN, SHAUL	Dissecting distributed representations by advanced population activity analysis methods and modeling	EB028171
DYER, EVA	A comparative framework for modeling the low-dimensional geometry of neural population states	EB029852
ENGEL, TATIANA	Discovering dynamic computations from large-scale neural activity recordings	EB026949
FLETCHER, PRESTON THOMAS, WANG, BEI (contact)	Beyond Diagnostic Classification of Autism: Neuroanatomical, Functional, and Behavioral Phenotypes	EB022876
GATES, KATHLEEN	Network Connectivity Modeling of Heterogeneous Brain Data to Examine Ensembles of Activity Across Two Levels of Dimensionality	EB022904
GOLD, JOSHUA I (contact); BALASUBRAMANIAN, VIJAY	Mental, measurement, and model complexity in neuroscience	EB026945
HANSON, STEPHEN JOSE	EFFECTIVE CONNECTIVITY IN BRAIN NETWORKS: Discovering Latent Structure, Network Complexity and Recurrence	EB022858
HOWARD, MARC W	Toward a Theory for Macroscopic Neural Computation Based on Laplace Transform	EB022864
JONES, STEPHANIE RUGGIANO (contact); HAMALAINEN, MATTI ; HINES, MICHAEL L	Human Neocortical Neurosolver	EB022889
KEILHOLZ, SHELLA D	Crossing space and time: uncovering the nonlinear dynamics of multimodal and multiscale brain activity	EB029857
KILPATRICK, ZACHARY PETER	Connecting neural circuit architecture and experience-driven probabilistic computations	EB029847
KORDING, KONRAD P	Quantifying causality for neuroscience	EB028162
KRAMER, MARK ALAN (contact); EDEN, URI TZVI	Measuring, Modeling, and Modulating Cross-Frequency Coupling	EB026938
LITWIN-KUMAR, ASHOK	Relating structure and function in synapse-level wiring diagrams	EB029858
LUO, XI	Large-scale Network Modeling for Brain Dynamics: Statistical Learning and Optimization	EB022911
LYTTON, WILLIAM W (contact); ANTIC, SRDJAN D	Embedded Ensemble Encoding	EB022903
MAKSE, HERNAN	Application of the principle of symmetry to neural circuitry: from building blocks to neural synchronization in the connectome	EB028157
MAKSE, HERNAN (contact); HOLODNY, ANDREI I	Graph theoretical analysis of the effect of brain tumors on functional MRI networks	EB022720
MENON, VINOD	Novel Bayesian linear dynamical systems-based methods for discovering human brain circuit dynamics in health and disease	EB022907
MIHALAS, STEFAN	Modeling the structure-function relation in a reconstructed cortical tissue	EB029813
MISHNE, GAL	Data-driven analysis for neuronal dynamic modeling	EB026936
MITRA, PARTHA PRATIM (contact); WANG, YUSU	Methods from Computational Topology and Geometry for Analysing Neuronal Tree and Graph Data	EB022899
NEMENMAN, ILYA M (contact); SOBER, SAMUEL	Neural mechanisms and behavioral consequences of non-Gaussian likelihoods in sensorimotor learning	EB022872
PALMER, STEPHANIE E (contact); BIALEK, WILLIAM ; SCHWAB, DAVID JASON	Coarse-graining approaches to networks, learning, and behavior	EB026943
PANINSKI, LIAM M	Next-Generation Calcium Imaging Analysis Methods	EB022913
*PARK, IL MEMMING (contact); PILLOW, JONATHAN WILLIAM	Real-time statistical algorithms for controlling neural dynamics and behavior	EB026946
RAJ, ASHISH (contact); NAGARAJAN, SRIKANTAN S	Multimodal modeling framework for fusing structural and functional connectome data	EB022717
RAJAN, KANAKA	Multi-region Network of Networks Recurrent Neural Network Models of Adaptive and Maladaptive Learning	EB028166
RINGACH, DARIO L	Bayesian estimation of network connectivity and motifs	EB022915
SANTAMARIA, FIDEL	A unified framework to study history dependence in the nervous system	EB026939
SEJNOWSKI, TERRENCE J	Nonlinear Causal Analysis of Neural Signals	EB026899
SHADMEHR, RAZA	A new theory of population coding in the cerebellum	EB028156
SHEN, DINGGANG (contact); YAP, PEW-THIAN	Diagnosis of Alzheimers Disease Using Dynamic High-Order Brain Networks	EB022880
SHOUVAL, HAREL ZEEV (contact); BRUNEL, NICOLAS	Learning spatio-temporal statistics from the environment in recurrent networks	EB022891
SINGH, VIKAS (contact); JOHNSON, STERLING C	Manifold-valued statistical models for longitudinal morphometic analysis in preclinical Alzheimers disease (AD)	EB022883
SOMMER, FRIEDRICH T	Building analysis tools and a theory framework for inferring principles of neural computation from multi-scale organization in brain recordings	EB026955
WITTEN, DANIELA (contact); BUICE, MICHAEL	Models and Methods for Calcium Imaging Data with Application to the Allen Brain Observatory	EB026908
WOMELSDORF, THILO	Mechanisms of Information Routing in Primate Fronto-striatal Circuits	EB028161
YE, BING (contact); DIERSSEN, MARA	New methods and theories to interrogate organizational principles from single cell to neuronal networks	EB028159