Funded Projects
MSM Funded projects
Coronary Blood Flow: Integrated Theory and Experiments
Key Personnel: Brian Carlson
Grant No.:
5 U01 HL118738 06
Project collaborators:
Johnathan Tune, Ghassan Kassab
MSM Resource - Models, Tools, Databases:
MODELLING THE GROWTH OF THE MIC NICHE AT THE SYSTEM LEVEL
Key Personnel: Zhiwei Ji
Grant No.:
U01 CA166886
Project collaborators:
MSM Resource - Models, Tools, Databases:
Predictive multiscale in silico cardio-pharmacology
PI: Colleen Clancy
Grant No.:
U01 HL126273
Project collaborators:
MSM Resource - Models, Tools, Databases:
RF1 MH128776 "A web-based framework for multi-modal visualization and annotation of neuroanatomical”
PI: yoav freund
Grant No.:
MH128776
Project collaborators:
MSM Resource - Models, Tools, Databases:
Sensorimotor processing, decision making, and internal states: towards a realistic multiscale circuit model of the larval zebrafish brain)., N/A, N/A
PI: Florian Engert
Grant No.:
19NS104653
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Florian Engert
Grant No.:
na
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Florian Engert
Grant No.:
na
Project collaborators:
MSM Resource - Models, Tools, Databases:
Theories, Models and Methods for Analysis of Complex Data from the Brain
PI: Moo Chung
Grant No.:
BRAINR01EB022856
Project collaborators:
MSM Resource - Models, Tools, Databases:
1R01EB026939 A UNIFIED FRAMEWORK TO STUDY HISTORY DEPENDENCE IN THE NERVOUS SYSTEM , N/a
PI: Fidel Santamaria
Grant No.:
1R01EB026939
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Fidel Santamaria
Grant No.:
1R01EB026939
Project collaborators:
MSM Resource - Models, Tools, Databases:
A Brain Circuit Program for Understanding the Sensorimotor Basis of Behavior, Dissecting distributed representations by advanced population activity analysis methods and modeling
PI: Shaul Druckmann
Grant No.:
NS104655
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Shaul Druckmann
Grant No.:
EB028171
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Shaul Druckmann
Grant No.:
EB028171
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Shaul Druckmann
Grant No.:
NS104655
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Shaul Druckmann
Grant No.:
EB028171
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Shaul Druckmann
Grant No.:
EB028171
Project collaborators:
MSM Resource - Models, Tools, Databases:
A Brain Circuit Program for Understanding the Sensorimotor Basis of Behavior
PI: Michael Dickinson
Grant No.:
BRAINU19NS104655
Project collaborators:
MSM Resource - Models, Tools, Databases:
A comparative framework for modeling the low-dimensional geometry of neural population states
PI: Eva Dyer
Grant No.:
EB029852
Project collaborators:
HbCO2
MSM Resource - Models, Tools, Databases:
A Lower Extremity Neuromusculoskeletal Human Simulator: Addressing Multiscale Challenges
PI: Kevin Shelburne
Grant No.:
U01AR072989
Project collaborators:
Peter Laz, Paul Rullkoetter, Clare Fitzpatrick, Brad Davidson, Chadd Clary
MSM Resource - Models, Tools, Databases:
A multi-scale computational model of the extracellular matrix of the lung
PI: Bela Suki
Grant No.:
HL139466
Project collaborators:
Jason H.T. Bates
MSM Resource - Models, Tools, Databases:
PI: Jason Bates
Grant No.:
HL139466
Project collaborators:
Bela Suki, PhD
MSM Resource - Models, Tools, Databases:
A multi-scale model to predict outcomes of immunomodulation and drug therapy during TB
PI: Denise Kirschner
Grant No.:
R01EB012579
Project collaborators:
JoAnne Flynn, Jennifer Linderman
MSM Resource - Models, Tools, Databases:
A Multi-Scale Modeling Construct of Knee Mechanics following ACL Reconstruction
PI: Darryl Thelen
Grant No.:
R01AR056201
Project collaborators:
Yasin Dhaher, PhD
MSM Resource - Models, Tools, Databases:
A PREDICTIVE MULTI-SCALE MODEL OF THE IMMUNE SYSTEM: AN INTEGRATED COMPUTATIONAL RESOURCE FOR INTERDISCIPLINARY APPLICATIONS.
PI: Tom Helikar
Grant No.:
5R35GM119770-02
Project collaborators:
MSM Resource - Models, Tools, Databases:
A web-based framework for multi-modal visualization and annotation of neuroanatomical data
PI: Samuel Wang
Grant No.:
BRAINMH128776
Project collaborators:
David Kleinfeld
MSM Resource - Models, Tools, Databases:
Agent-based Models to address the Crisis of Reproducibility and Precision Medicine.
PI: Gary An
Grant No.:
UO1EB025825
Project collaborators:
Chase Cockrell, Daniel Faissol
MSM Resource - Models, Tools, Databases:
Agent-based models, the Crisis of Reproducibility and Precision Medicine
PI: daniel faissol
Grant No.:
U01EB025825
Project collaborators:
MSM Resource - Models, Tools, Databases:
An integrative statistics-guided image-based multi-scale lung model
PI: Ching-Long Lin
Grant No.:
5U01HL11449402
Project collaborators:
Drs. Kung-Sik Chan, Kun Chen, Eric A. Hoffman, John Newell, Pengwen Chen
MSM Resource - Models, Tools, Databases:
Application of the principle of symmetry to neural circuitry: from building blocks to neural synchronization in the connectome
PI: Hernan Makse
Grant No.:
BRAINTMMR01EB028157
Project collaborators:
https://www.imagwiki.nibib.nih.gov/physiome-lung-modeling-tutorial/lung-exchange-o2co2
MSM Resource - Models, Tools, Databases:
Astrocyte Modulation of Neural Circuit Function and Behavior
PI: Guoqiang Yu
Grant No.:
BRAINNS123719
Project collaborators:
MSM Resource - Models, Tools, Databases:
Astrocyte modulation of neural circuit function and behavior
PI: Axel Nimmerjahn
Grant No.:
BRAINNS123719
Project collaborators:
MSM Resource - Models, Tools, Databases:
Bayesian Estimation of Network Connectivity and Motifs
Trainee: Martin Bertran
Grant No.:
1R01EB022915
Project collaborators:
Guillermo Sapiro, Dario Ringach, David Dunson, Natalia Martinez, Ye Wang
MSM Resource - Models, Tools, Databases:
Beyond Diagnostic Classification of Autism: Neuroanatomical, Functional, and Behavioral Phenotypes
PI: Bei Phillips
Grant No.:
EB022876
Project collaborators:
MSM Resource - Models, Tools, Databases:
BIGDATA: Modeling Simulation and Visualization for Medical Device Design
PI: Daniel Keefe
Grant No.:
1R01EB018205
Project collaborators:
Arthur Erdman
MSM Resource - Models, Tools, Databases:
Biomedical Simulations Resource
PI: David D'Argenio
Grant No.:
P41 EB001978
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Vasilis Marmarelis
Grant No.:
N/A
Project collaborators:
David D'Argenio, Ted Berger, Michael Khoo
MSM Resource - Models, Tools, Databases:
Biosimulation of Surgical Vocal Fold Injury
PI: Nicole Yee-Key Li-Jessen
Grant No.:
R03DC012112
Project collaborators:
MSM Resource - Models, Tools, Databases:
Boundary Element Fast Multipole Method on MATLAB Platform
PI: Sergey Makarov
Grant No.:
MASNM1920
Project collaborators:
Two Compartment with flow
MSM Resource - Models, Tools, Databases:
Bridging multiple scales in modeling targeted drug nanocarrier delivery
PI: Ravi Radhakrishnan
Grant No.:
NIHU01EB016027
Project collaborators:
MSM Resource - Models, Tools, Databases:
Bridging Multiple Scales in Modeling Targeted Drug Nanocarrier Delivery
PI: Portonovo Ayyaswamy
Grant No.:
U01 EB016027
Project collaborators:
David M. Eckmann, Ravi Radhakrishnan
MSM Resource - Models, Tools, Databases:
Building analysis tools and a theory framework for inferring principles of neural computation from multi-scale organization in brain recordings
PI: Friedrich Sommer
Grant No.:
1R01EB026955
Project collaborators:
MSM Resource - Models, Tools, Databases:
BUILDING MULTILEVEL MODELS OF THERAPEUTIC RESPONSE IN THE LUNGS
PI: Tim Corcoran
Grant No.:
1U01HL131046-01
Project collaborators:
MSM Resource - Models, Tools, Databases:
Building Multilevel Models of Therapeutic Response in the Lungs
PI: Robert Parker
Grant No.:
1U01HL131046-01
Project collaborators:
Timothy E. Corcoran
MSM Resource - Models, Tools, Databases:
Cardiac Energy Grid
PI: James Bassingthwaighte
Grant No.:
R01 HL122199
Project collaborators:
H Sauro, Dan Beard, Andrew McCulloch, Ranjan Dash, Michael Regnier
MSM Resource - Models, Tools, Databases:
CAREER: Multiscale Modeling of a Virtual Kidney during the Onset and Progression of Diabetic Kidney Disease
PI: Ashlee Ford Versypt
Grant No.:
NSF 1845117
Project collaborators:
MSM Resource - Models, Tools, Databases:
Center for Integrative Biomedical Engineering, Integration of Uncertainty Quantification with the SCIRun Bioelectric Field Simulation Pipeline
PI: Rob MacLeod
Grant No.:
P41GM103545
Project collaborators:
Chris Johnson, Ross Whitaker, and Dana Brooks, Akil Narayan
MSM Resource - Models, Tools, Databases:
PI: Rob MacLeod
Grant No.:
U24EB029012
Project collaborators:
Chris Johnson, Ross Whitaker, and Dana Brooks, Akil Narayan
MSM Resource - Models, Tools, Databases:
PI: Rob MacLeod
Grant No.:
P41GM103545
Project collaborators:
Chris Johnson, Ross Whitaker, and Dana Brooks, Akil Narayan
MSM Resource - Models, Tools, Databases:
PI: Rob MacLeod
Grant No.:
U24EB029012
Project collaborators:
Chris Johnson, Ross Whitaker, and Dana Brooks, Akil Narayan
MSM Resource - Models, Tools, Databases:
Central Mechanisms of Airway Protection
PI: Donald Bolser
Grant No.:
HL103415
Project collaborators:
Kendall Morris
MSM Resource - Models, Tools, Databases:
Clinical Data Intelligence & Advanced Analytics to Reduce Drug Diversion across the Care Delivery Cycle and Drug Supply Chain in Health Systems
PI: Tom Knight
Grant No.:
1R44DA044083-01
Project collaborators:
MSM Resource - Models, Tools, Databases:
Coarse graining approaches to networks, learning and behavior
PI: Stephanie Palmer
Grant No.:
BRAINEB026943
Project collaborators:
HbCO, HbO.CO2.H.DPG.T
MSM Resource - Models, Tools, Databases:
Predictive Modeling of Bioelectric Activity on Mammalian Multilayered Neuronal Structures in the Presence of Supraphysiological Electric Fields, Combined Mechanistic and Input-Output Modeling of the Hippocampus During Spatial Navigation
PI: Dong Song
Grant No.:
U01EB025830
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Dong Song
Grant No.:
RF1DA055665
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Dong Song
Grant No.:
U01EB025830
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Dong Song
Grant No.:
RF1DA055665
Project collaborators:
MSM Resource - Models, Tools, Databases:
Competing Segment: Models to Predict Protein Biomaterials Performance
Key Personnel: Chi-Hua Yu
Grant No.:
HH4977
Project collaborators:
MSM Resource - Models, Tools, Databases:
Competitive Renewal of Development, Improvement and Extension of the Tissue Simulation Environment - CompuCell3D
Key Personnel: Andy Somogyi
Grant No.:
R01GM122424
Project collaborators:
MSM Resource - Models, Tools, Databases:
Computational and circuit mechanisms underlying motor control
Key Personnel: Rajendra Bose
Grant No.:
NS104649-01
Project collaborators:
MSM Resource - Models, Tools, Databases:
Computational and Circuit Mechanisms Underlying Rapid Learning, Computational and Circuit Mechanisms Underlying Rapid Learning
Key Personnel: Ariel Rokem
Grant No.:
BRAINU19NS107609
Project collaborators:
MSM Resource - Models, Tools, Databases:
Key Personnel: Ariel Rokem
Grant No.:
BRAINU19NS107609
Project collaborators:
MSM Resource - Models, Tools, Databases:
Key Personnel: Ariel Rokem
Grant No.:
BRAINU19NS107609
Project collaborators:
MSM Resource - Models, Tools, Databases:
Key Personnel: Ariel Rokem
Grant No.:
BRAINU19NS107609
Project collaborators:
MSM Resource - Models, Tools, Databases:
Discovering dynamic computations in large-scale neural activity recordings, Computational frameworks for integrating large-scale cortical dynamics, connectivity, and behavior
PI: Tatiana Engel
Grant No.:
BRAINR01EB026949
Project collaborators:
A. Churchland, K. Shenoy
MSM Resource - Models, Tools, Databases:
PI: Tatiana Engel
Grant No.:
BRAINRF1DA055666
Project collaborators:
A. Churchland, K. Shenoy
MSM Resource - Models, Tools, Databases:
PI: Tatiana Engel
Grant No.:
BRAINR01EB026949
Project collaborators:
A. Churchland, K. Shenoy
MSM Resource - Models, Tools, Databases:
PI: Tatiana Engel
Grant No.:
BRAINRF1DA055666
Project collaborators:
A. Churchland, K. Shenoy
MSM Resource - Models, Tools, Databases:
Computational neuroscience of language processing in the human brain
Trainee: Colton Casto
Grant No.:
Project collaborators:
MSM Resource - Models, Tools, Databases:
Connecting neural circuit architecture and experience-driven probabilistic computations, N/A
PI: Zachary Kilpatrick
Grant No.:
BRAINTMMR01EB029847
Project collaborators:
Alveolar collapse, Pleural pressure, FEV
MSM Resource - Models, Tools, Databases:
PI: Zachary Kilpatrick
Grant No.:
NA
Project collaborators:
Alveolar collapse, Pleural pressure, FEV
MSM Resource - Models, Tools, Databases:
Constitutive and Agent Based Multiscale Models to Improve Vein Graft Survival
PI: Roger TRAN-SON-TAY
Grant No.:
1U01HL119178-01
Project collaborators:
Scott Berceli, Marc Garbey, and Rongling Wu
MSM Resource - Models, Tools, Databases:
Constitutive and Agent-Based Multiscale Models to Improve Vein Graft Survival
PI: Scott Berceli
Grant No.:
1U01HL119178
Project collaborators:
Marc Garbey, Rongling Wu, Roger Tran-Son-Tay
MSM Resource - Models, Tools, Databases:
Controlling the Mechanobiology of Cutaneous Wounds to Reduce Hypertrophic Scar
PI: Ed Sander
Grant No.:
AR063867
Project collaborators:
MSM Resource - Models, Tools, Databases:
Cortical basis of complex motor sequences in humans for neural interfaces
PI: Jaimie Henderson
Grant No.:
Project collaborators:
MSM Resource - Models, Tools, Databases:
Cortical-Basal Ganglia Speech Networks
PI: Mark Richardson
Grant No.:
5U01NS117836
Project collaborators:
Frank Guenther, Rob Turner, Julie Fiez, Lori Holt, Alan Bush, Nathan Crone, Anna Korzeniewska
MSM Resource - Models, Tools, Databases:
Cracking the Olfactory Code
PI: Rick Gerkin
Grant No.:
U19NS112953
Project collaborators:
MSM Resource - Models, Tools, Databases:
CRCNS: Improving Bioelectronic Selectivity with Intrafascicular Stimulation
PI: James Abbas
Grant No.:
EB027584
Project collaborators:
Ranu Jung
MSM Resource - Models, Tools, Databases:
Cross-scale interactions between mineral and collagen for tendon-bone attachment
PI: Guy Genin
Grant No.:
U01EB01642201A1
Project collaborators:
Markus Buehler, Ioannis Chasiotis, Pedro Ponte Castañeda, Stavros Thomopoulos
MSM Resource - Models, Tools, Databases:
PI: Markus Buehler
Grant No.:
U01EB016422
Project collaborators:
Ioannis Chasiotis, David Kaplan, Guy Genin, Pedro Ponte Casteñada, Stavros Thomopolous, Joyce Wong
MSM Resource - Models, Tools, Databases:
PI: Stavros Thomopoulos
Grant No.:
U01EB016422-01A1
Project collaborators:
Markus Buehler, Ioannis Chasiotis, Guy Genin, Pedro Ponte Casteneda
MSM Resource - Models, Tools, Databases:
Key Personnel: Ioannis Chasiotis
Grant No.:
U01EB016422-01A1
Project collaborators:
Markus Buehler, Guy Genin, Pedro Ponte Casteñada, Stavros Thomopoulos
MSM Resource - Models, Tools, Databases:
Key Personnel: Pedro Ponte Casteneda
Grant No.:
U01EB016422-01A1
Project collaborators:
Markus Buehler, Ioannis Chasiotis, Guy Genin, Stavros Thomopoulos
MSM Resource - Models, Tools, Databases:
Crossing space and time: uncovering the nonlinear dynamics of multimodal and multiscale brain activity
PI: Shella Keilholz
Grant No.:
Project collaborators:
MSM Resource - Models, Tools, Databases:
Data-driven analysis for neuronal dynamic modeling
PI: Gal Mishne
Grant No.:
R01EB026936
Project collaborators:
MSM Resource - Models, Tools, Databases:
Developing MSM Methodologies
PI: Terence Sanger
Grant No.:
EB021921
Project collaborators:
Simon Giszter
MSM Resource - Models, Tools, Databases:
Dissemination of libRoadRunner and CompuCell3D, Development and Improvement of the Tissue Simulation Toolkit
PI: James Glazier
Grant No.:
U24EB028887
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: James Glazier
Grant No.:
R01GM122424
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: James Glazier
Grant No.:
U24EB028887
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: James Glazier
Grant No.:
R01GM122424
Project collaborators:
MSM Resource - Models, Tools, Databases:
Development of a Multiscale Mechanistic Simulation of Acetaminophen Induced Liver Damage
Key Personnel: Jim Sluka
Grant No.:
U01GM111243
Project collaborators:
Glazier
MSM Resource - Models, Tools, Databases:
Diagnosis of Alzheimers Disease Using Dynamic High-Order Brain Networks
Key Personnel: Han Zhang
Grant No.:
BRAINR01EB022880
Project collaborators:
MSM Resource - Models, Tools, Databases:
Key Personnel: Zhen Zhou
Grant No.:
BRAINR01EB022880
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Pew-Thian Yap
Grant No.:
EB022880
Project collaborators:
MSM Resource - Models, Tools, Databases:
Dissemination of a tool for data-driven multiscale modeling of brain circuits
PI: Salvador Dura-Bernal
Grant No.:
U24 EB028998-01
Project collaborators:
MSM Resource - Models, Tools, Databases:
Don't have one just want to participate and make connections
PI: Tarynn Witten
Grant No.:
my invite email expired before I could respond
Project collaborators:
MSM Resource - Models, Tools, Databases:
Dynamics and Causal Functions of Large-Scale Cortical and Subcortical Networks
PI: Peter Brunner
Grant No.:
U01NS108916
Project collaborators:
MSM Resource - Models, Tools, Databases:
Efficient resource allocation and information retention in working memory circuits
PI: ShiNung Ching
Grant No.:
EB028154
Project collaborators:
Lawrence Snyder
MSM Resource - Models, Tools, Databases:
PI: lawrence snyder
Grant No.:
R01EB028154
Project collaborators:
ShiNung Ching
MSM Resource - Models, Tools, Databases:
Embedded Ensemble Encoding
Key Personnel: Sergio Angulo
Grant No.:
EB02290301
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Srdjan Antic
Grant No.:
EB29633330
Project collaborators:
William Lytton
MSM Resource - Models, Tools, Databases:
Extension of NEURON simulator for simulation of reaction-diffusion in neurons, Microconnectomics of neocortex: a multiscale computer model, Embedded Ensemble Encoding, Microconnectomics of neocortex: a multiscale computer model, SPARC: Modeling network dynamics of cardiac right atrial ganglionic plexus to enable in silico testing of vagal neurostimulation strategies
PI: William Lytton
Grant No.:
R01MH086638
Project collaborators:
Michael Hines, Gordon Shepherd, Robert McDougal, Srdjan Antic, Salvador Dura-Bernal
MSM Resource - Models, Tools, Databases:
PI: William Lytton
Grant No.:
R01EB022903
Project collaborators:
Michael Hines, Gordon Shepherd, Robert McDougal, Srdjan Antic, Salvador Dura-Bernal
MSM Resource - Models, Tools, Databases:
PI: William Lytton
Grant No.:
R01MH086638
Project collaborators:
Michael Hines, Gordon Shepherd, Robert McDougal, Srdjan Antic, Salvador Dura-Bernal
MSM Resource - Models, Tools, Databases:
PI: William Lytton
Grant No.:
R01EB022903
Project collaborators:
Michael Hines, Gordon Shepherd, Robert McDougal, Srdjan Antic, Salvador Dura-Bernal
MSM Resource - Models, Tools, Databases:
PI: William Lytton
Grant No.:
R01MH086638
Project collaborators:
Michael Hines, Gordon Shepherd, Robert McDougal, Srdjan Antic, Salvador Dura-Bernal
MSM Resource - Models, Tools, Databases:
PI: William Lytton
Grant No.:
R01EB022903
Project collaborators:
Michael Hines, Gordon Shepherd, Robert McDougal, Srdjan Antic, Salvador Dura-Bernal
MSM Resource - Models, Tools, Databases:
PI: William Lytton
Grant No.:
R01MH086638
Project collaborators:
Michael Hines, Gordon Shepherd, Robert McDougal, Srdjan Antic, Salvador Dura-Bernal
MSM Resource - Models, Tools, Databases:
PI: William Lytton
Grant No.:
R01EB022903
Project collaborators:
Michael Hines, Gordon Shepherd, Robert McDougal, Srdjan Antic, Salvador Dura-Bernal
MSM Resource - Models, Tools, Databases:
Emergent dynamics from network connectivity: a minimal model
Key Personnel: Katherine Morrison
Grant No.:
BRAINEB022862
Project collaborators:
MSM Resource - Models, Tools, Databases:
Executive committee member
Trainee: Bruno Rego
Grant No.:
NA
Project collaborators:
MSM Resource - Models, Tools, Databases:
EXTENSION OF NEURON SIMULATOR FOR SIMULATION OF REACTION-DIFFUSION IN NEURONS
Key Personnel: Adam Newton
Grant No.:
5R01MH086638
Project collaborators:
MSM Resource - Models, Tools, Databases:
FEBio: Finite Elements for Biomechanics and Biophysics
PI: Jeff Weiss
Grant No.:
R01GM083925
Project collaborators:
MSM Resource - Models, Tools, Databases:
Filtered Point Process Inference Framework for Modeling Neural Data
PI: Emery Brown
Grant No.:
5R01EB022726
Project collaborators:
Mriganka Sur, MIT, Wasim Malik, MGH
MSM Resource - Models, Tools, Databases:
Human Neocortical Neurosolver
PI: Stephanie Jones
Grant No.:
EB022889
Project collaborators:
MSM Resource - Models, Tools, Databases:
Image Driven Multi-Scale Modeling to Predict Treatment Response in Breast Cancer
Other: Erin Rericha
Grant No.:
1U01 CA174706-01
Project collaborators:
Tom Yankeelov, Vito Quaranta, Mike Miga
MSM Resource - Models, Tools, Databases:
Key Personnel: Darren Tyson
Grant No.:
1U01CA174706
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Thomas Yankeelov
Grant No.:
U01CA174706
Project collaborators:
MSM Resource - Models, Tools, Databases:
Image-based Multi-scale Modeling Framework of the Cardiopulmonary System: Longitudinal Calibration and Assessment of Therapies in Pediatric Pulmonary Hypertension
PI: C. Alberto Figueroa
Grant No.:
U01HL135842
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Carlos Figueroa
Grant No.:
U01HL135842
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Seungik Baek
Grant No.:
1U01HL135842
Project collaborators:
Alberto Figueroa
MSM Resource - Models, Tools, Databases:
Infarct-related Ventricular Tachycardia Mechanisms: From Micro to Clinical, Simulation guidance of ablation therapy for persistent atrial fibrillation
PI: Natalia Trayanova
Grant No.:
U01HL141074
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Natalia Trayanova
Grant No.:
U01HL141074
Project collaborators:
MSM Resource - Models, Tools, Databases:
Integrating Bioinformatics into Multiscale Models for Hepatocellular Carcinoma
Key Personnel: Lyla Atta
Grant No.:
1U01CA212007-01A1
Project collaborators:
MSM Resource - Models, Tools, Databases:
Key Personnel: Emma Bigelow
Grant No.:
n/a
Project collaborators:
Elana Fertig
MSM Resource - Models, Tools, Databases:
Key Personnel: Archana Balan
Grant No.:
U01
Project collaborators:
MSM Resource - Models, Tools, Databases:
Integrating bioinformatics into multiscale models for hepatocellular carcinoma
Key Personnel: Richard Sové
Grant No.:
U01CA212007
Project collaborators:
Elana Fertig, Aleksander Popel, Phuoc Tran, Andrew Ewald
MSM Resource - Models, Tools, Databases:
Integrating bioinformatics into multiscale models for hepatocellular carcinoma
PI: Elana Fertig
Grant No.:
U01CA212007
Project collaborators:
Aleksander Popel, Phuoc Tran, Andrew Ewald
MSM Resource - Models, Tools, Databases:
PI: Phuoc Tran
Grant No.:
1U01CA212007
Project collaborators:
Andrew Josef Ewald, PHD; Elana Judith Fertig (contact), PHD; ALEKSANDER S. POPEL, PhD
MSM Resource - Models, Tools, Databases:
Integration of Uncertainty Quantification with the SCIRun Bioelectric Field Simulation Pipeline
Other: Dana Brooks
Grant No.:
U24EB029012
Project collaborators:
Akil Narayan, Rob MacLeod
MSM Resource - Models, Tools, Databases:
Other: Lindsay Rupp
Grant No.:
U24EB029012
Project collaborators:
Rob MacLeod, Akil Narayan, Chris Johnson, and Dana Brooks, Ross Whitaker
MSM Resource - Models, Tools, Databases:
Other: Zexin Liu
Grant No.:
U24EB029012
Project collaborators:
Chris Johnson, Ross Whitaker, Akil Narayan, and Dana Brooks
MSM Resource - Models, Tools, Databases:
Key Personnel: Akil Narayan
Grant No.:
U24EB029012
Project collaborators:
and Dana Brooks, Rob MacLeod
MSM Resource - Models, Tools, Databases:
Integration of Uncertainty Quantification with the SCIRun Bioelectric Field Simulation Pipeline
Other: Sumientra Rampersad
Grant No.:
U24EB029012
Project collaborators:
Chris Johnson, Ross Whitaker, Akil Narayan, and Dana Brooks, Rob MacLeod
MSM Resource - Models, Tools, Databases:
Invasive Approach to Model Human Cortex-Basal Ganglia Action-Regulating Networks
PI: Nader Pouratian
Grant No.:
NS098961
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Vasileios Christopoulos
Grant No.:
1U01NS09896101
Project collaborators:
MSM Resource - Models, Tools, Databases:
Large-scale Network Modeling for Brain Dynamics: Statistical Learning and Optimization
PI: Xi Luo
Grant No.:
R01EB022911
Project collaborators:
MSM Resource - Models, Tools, Databases:
Learning spatio-temporal statistics from the environment in recurrent networks
PI: Nicolas Brunel
Grant No.:
EB022891
Project collaborators:
Harel Shouval
MSM Resource - Models, Tools, Databases:
LIGHTspace
PI: Karl Deisseroth
Grant No.:
Project collaborators:
MSM Resource - Models, Tools, Databases:
Local neuronal drive and neuromodulatory control of activity in the pial neurovascular circuit
PI: Anna Devor
Grant No.:
Project collaborators:
MSM Resource - Models, Tools, Databases:
MANIFOLD-VALUED STATISTICAL MODELS FOR LONGITUDINAL MORPHOMETIC ANALYSIS IN PRECLINICAL ALZHEIMER'S DISEASE (AD)
PI: Vikas Singh
Grant No.:
R01EB022883
Project collaborators:
MSM Resource - Models, Tools, Databases:
Mathematical modeling of the dynamics of Covid-19 pandemic
PI: Gilberto Gonzalez-Parra
Grant No.:
Project collaborators:
MSM Resource - Models, Tools, Databases:
MEASURING, MODELING, AND MODULATING CROSS-FREQUENCY COUPLING
PI: Mark Kramer
Grant No.:
R01EB026938
Project collaborators:
Alik Widge, Uri Eden
MSM Resource - Models, Tools, Databases:
Mechanisms of neural circuit dynamics in working memory and decision-making
PI: Carlos Brody
Grant No.:
1U19NS132720
Project collaborators:
MSM Resource - Models, Tools, Databases:
Key Personnel: Manuel Schottdorf
Grant No.:
5U19NS104648
Project collaborators:
MSM Resource - Models, Tools, Databases:
Mental, measurement, and model complexity in neuroscience
PI: Joshua Gold
Grant No.:
EB026945
Project collaborators:
Vijay Balasubramanian
MSM Resource - Models, Tools, Databases:
Methods from Computational Topology and Geometry for Analysing Neuronal Tree and Graph Data
PI: Partha Mitra
Grant No.:
Project collaborators:
MSM Resource - Models, Tools, Databases:
Micro-Temporal Proesses Underlying Health Behavior Adoption and Maintenance (microT Study)
PI: Stephen Intille
Grant No.:
1U01HL146327
Project collaborators:
MSM Resource - Models, Tools, Databases:
Microtemporal Processes Underlying Health Behavior Adoption and Maintenance
PI: Genevieve Dunton
Grant No.:
U01HL146327
Project collaborators:
MSM Resource - Models, Tools, Databases:
Model for Platelet Adhesion and Thrombus Formation
PI: Michael King
Grant No.:
HL097971
Project collaborators:
MSM Resource - Models, Tools, Databases:
Modeling and analysis of material transport in complex geometry of neurons
PI: Jessica Zhang
Grant No.:
NSF-CBET 1804929
Project collaborators:
MSM Resource - Models, Tools, Databases:
Modeling bi-directional signaling and cytoskeletal dynamics in 3D cell migrations
PI: Roger Kamm
Grant No.:
1U01CA177799-01
Project collaborators:
Muhammad Zaman, Douglas Lauffenburger, Frank Gertler
MSM Resource - Models, Tools, Databases:
MODELING BI-DIRECTIONAL SIGNALING AND CYTOSKELETAL DYNAMICS IN 3D CELL MIGRATIONS
PI: Muhammad Zaman
Grant No.:
5U01CA177799
Project collaborators:
MSM Resource - Models, Tools, Databases:
Modeling Brainstem Inflammation's Role in Systemic Dysfunction during Sepsis
PI: Thomas E. Dick
Grant No.:
U01EB021960
Project collaborators:
Kenneth A Loparo, Frank J. Jacono, Yoram Vodovotz, Yaroslav Molkov, Yee-Hsee Hsieh
MSM Resource - Models, Tools, Databases:
MODELING BRAINSTEM INFLAMMATION'S ROLE IN SYSTEMIC MODELING BRAINSTEM INFLAMMATION'S ROLE IN SYSTEMIC
Key Personnel: William Barnett
Grant No.:
U01 EB 021960
Project collaborators:
MSM Resource - Models, Tools, Databases:
Modeling multi-area dynamics during motor control
Key Personnel: Larry Abbott
Grant No.:
1U19NS104649-01
Project collaborators:
MSM Resource - Models, Tools, Databases:
Modeling Multiscale Control of Liver Regeneration
PI: Rajanikanth Vadigepalli
Grant No.:
EB023224
Project collaborators:
MSM Resource - Models, Tools, Databases:
Modeling the Role of Brainstem Inflammation in Systemic Dysfunction during Sepsis.
Key Personnel: Frank Jacono
Grant No.:
1U01EB021960-01A1
Project collaborators:
Thomas E. Dick, Kenneth A. Loparo, Yoram Vodovotz, Yaroslav Molkov
MSM Resource - Models, Tools, Databases:
Modeling the structure-function relation in a reconstructed cortical tissue, N/A
PI: Stefan Mihalas
Grant No.:
EB029813
Project collaborators:
BTEX 20
MSM Resource - Models, Tools, Databases:
PI: Stefan Mihalas
Grant No.:
NA
Project collaborators:
BTEX 20
MSM Resource - Models, Tools, Databases:
Modeling the structure-function relation in a reconstructed cortical tissue
PI: Anton Arkhipov
Grant No.:
1R01EB029813
Project collaborators:
MSM Resource - Models, Tools, Databases:
MODELLING THE GROWTH OF THE MIC NICHE AT THE SYSTEM LEVEL
Key Personnel: Jing Su
Grant No.:
5U01CA166886-03
Project collaborators:
MSM Resource - Models, Tools, Databases:
Models and Methods for Calcium Imaging Data with Application to the Allen Brain Observatory
PI: Michael Buice
Grant No.:
BRAINEB026908
Project collaborators:
MSM Resource - Models, Tools, Databases:
Models and methods for calcium imaging data, with application to the Allen Brain Observatory
PI: Daniela Witten
Grant No.:
5R01EB026908
Project collaborators:
Michael Buice
MSM Resource - Models, Tools, Databases:
Models to Predict Protein Biomaterial Performance
Key Personnel: Davoud Ebrahimi
Grant No.:
U01EB014976
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: David Kaplan
Grant No.:
U01EB014976
Project collaborators:
Markus Buehler (MIT), Joyce Wong (BU)
MSM Resource - Models, Tools, Databases:
Models to predict protein biomedical performance
PI: Joyce Wong
Grant No.:
U01 EB014976
Project collaborators:
MSM Resource - Models, Tools, Databases:
Modular design of multiscale models, with an application to the innate immune response to fungal respiratory pathogens
PI: Reinhard Laubenbacher
Grant No.:
1U01EB02450101
Project collaborators:
MSM Resource - Models, Tools, Databases:
Key Personnel: Joseph Masison
Grant No.:
1U01EB024501
Project collaborators:
MSM Resource - Models, Tools, Databases:
Modular design of multiscale models, with an application to the innate immune response to fungal respiratory pathogens.
Other: Bruce Shapiro
Grant No.:
U01EB024501
Project collaborators:
MSM Resource - Models, Tools, Databases:
MSM proposal currently in review
PI: Silvia Blemker
Grant No.:
NA
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multi-region 'Network of Networks' Recurrent Neural Network Models of Adaptive and Maladaptive Learning
PI: Kanaka Rajan
Grant No.:
1R01EB02816601
Project collaborators:
Karl Deisseroth - Stanford University; Kafui Dzirasa - Duke University; Peter Rudebeck - Mount Sinai; Helen Mayberg - Mount Sinai
MSM Resource - Models, Tools, Databases:
Multi-Scale Laws of Myocardial Growth and Remodeling
PI: Ellen Kuhl
Grant No.:
U01-HL119578
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: julius guccione
Grant No.:
U01HL119578
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multi-scale modeling of gas transport through channels in living cells
Key Personnel: Ahmad Raeisi Najafi
Grant No.:
U01-GM111251
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multi-scale modeling of genetic variation in a developmental network
Other: Paul Marjoram
Grant No.:
1U01GM103804
Project collaborators:
Nuzhdin, De Pace, Rohs
MSM Resource - Models, Tools, Databases:
PI: Angela DePace
Grant No.:
1 U01 GM103804-01A1
Project collaborators:
Sergey Nuzhdin, Remo Rohs, Paul Marjoram
MSM Resource - Models, Tools, Databases:
Multi-scale modeling of influenza vaccination strategies for optimal T cell immunity
PI: Veronika Zarnitsyna
Grant No.:
U01HL139483
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multi-Scale Modeling to Predict Long-Term Growth and Remodeling of Skin in Response to Stretch
PI: Adrian Buganza Tepole
Grant No.:
R01AR074525
Project collaborators:
MSM Resource - Models, Tools, Databases:
MULTIMODALITY IMAGING-DRIVEN MULTIFIDELITY MODELING OF AORTIC DISSECTION
Key Personnel: Minglang Yin
Grant No.:
U01HL142518
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multiscale . Model of the vagal outflow to the heart
PI: james schwaber
Grant No.:
UO1HL133360
Project collaborators:
Rajanikanth Vadigepalli
MSM Resource - Models, Tools, Databases:
Multiscale Analysis of Trauma
Key Personnel: Evan Tsiklidis
Grant No.:
U01-HL-131053
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Scott Diamond
Grant No.:
131053
Project collaborators:
Talid Sinno, Carrie Sims, Lawrence Brass, Yannis Kevrekidis
MSM Resource - Models, Tools, Databases:
Multiscale modeling and empirical study of a mechanism limiting blood clot growth
PI: Mark Alber
Grant No.:
1U01HL116330
Project collaborators:
Dr. John Weisel, University of Pennsylvania School of Medicine
MSM Resource - Models, Tools, Databases:
Multiscale modeling and empirical study of a mechanism limiting blood clot growth.
Key Personnel: Zhiliang Xu
Grant No.:
NIH: IU01HL116330-01A1
Project collaborators:
Mark Alber, Rustem Litvinov, John Weisel
MSM Resource - Models, Tools, Databases:
Multiscale Modeling for Treatment discovery in Duchenne Muscular Dystrophy
PI: Shayn Peirce-Cottler
Grant No.:
U01AR06939301
Project collaborators:
Silvia Blemker
MSM Resource - Models, Tools, Databases:
Multiscale Modeling of Blood Flow and Platelet Mediated Thrombosis
PI: Danny Bluestein
Grant No.:
5U01HL131052
Project collaborators:
Yuefan Deng, Marvin J Slepian
MSM Resource - Models, Tools, Databases:
Multiscale Modeling of Bone Environment Responses to Metastatic Prostate Cancer
PI: David Basanta
Grant No.:
U01CA202958
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multiscale Modeling of Bone Environment Responses to Metastatic Prostate Cancer
PI: Conor Lynch
Grant No.:
U01CA202958
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multiscale modeling of cerebral blood flow and oxygen transport
PI: Timothy Secomb
Grant No.:
U01 HL133362
Project collaborators:
Sava Sakadzic, David Boas
MSM Resource - Models, Tools, Databases:
Multiscale Modeling of Circadian Rhthyms
PI: William (Bill) Cannon
Grant No.:
1U01EB02254601
Project collaborators:
Jay Dunlap, Dartmouth; Jennifer Hurley, RPI
MSM Resource - Models, Tools, Databases:
Multiscale Modeling of Circadian Rhythms
Key Personnel: Samuel Britton
Grant No.:
U01EB022546
Project collaborators:
William Cannon, Jay Dunlap, Jennifer Hurley, Mark Alber
MSM Resource - Models, Tools, Databases:
Multiscale Modeling of Clotting Risk in Atrial Fibrillation
PI: Boyce Griffith
Grant No.:
U01HL143336
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multiscale Modeling of Gas Transport Through Channels in Living Cells
Key Personnel: Paween Mahinthichaichan
Grant No.:
U01-GM111251
Project collaborators:
MSM Resource - Models, Tools, Databases:
MULTISCALE MODELING OF INFLUENZA VACCINATION STRATEGIES FOR OPTIMAL T CELL IMMUNITY
Key Personnel: Zheng-Rong Li
Grant No.:
U01HL139483
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multiscale modeling of influenza vaccination strategies for optimal T cell immunity
PI: Jacob Kohlmeier
Grant No.:
HL139483
Project collaborators:
Veronika Zarnitsyna
MSM Resource - Models, Tools, Databases:
Multiscale modeling of inherited cardiomyopathies and therapeutic interventions
PI: Jonathan Wenk
Grant No.:
U01HL133359
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Kenneth Campbell
Grant No.:
HL133359
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multiscale Modeling of Lung Disease-Influenced Aerosol Dosimetry
Key Personnel: Andrew Kuprat
Grant No.:
1U01ES028669-01A1
Project collaborators:
Chantal Darquenne, Richard Corley, Bahman Asgharian
MSM Resource - Models, Tools, Databases:
PI: Chantal Darquenne
Grant No.:
1 U01 ES028669-01A1
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multiscale modeling of metabolic and regulatory networks
Key Personnel: Neeraj Kumar
Grant No.:
N/A
Project collaborators:
William Cannon
MSM Resource - Models, Tools, Databases:
Multiscale Modeling of Sickle Cell Anemia: Methods and Validation
PI: George Karniadakis
Grant No.:
U01HL11447601
Project collaborators:
MIT (Ming Dao), MGH (John Higgins), U Houston (Peter Vekilov)
MSM Resource - Models, Tools, Databases:
Multiscale Modeling of Sickle Cell Anemia: Methods and Validation
PI: Ming Dao
Grant No.:
U01HL114476
Project collaborators:
George Karniadakis
MSM Resource - Models, Tools, Databases:
Key Personnel: Xuejin Li
Grant No.:
U01HL114476
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multiscale modeling of the cocktail party problem
PI: Mounya Elhilali
Grant No.:
U01AG058532
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multiscale modeling of the failing heart for cardiac resynchronization therapy
PI: Andrew McCulloch
Grant No.:
1R01HL096544
Project collaborators:
David Krummen, Jeffrey Omens
MSM Resource - Models, Tools, Databases:
Multiscale Modeling of the Mammalian Circadian Clock: The Role of GABA Signaling
PI: Michael Henson
Grant No.:
U01 EB021956-01
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multiscale modeling of the mammalian circadian clock: The Role of GABA Signaling
PI: Erik Herzog
Grant No.:
U01EB021956
Project collaborators:
Michael Henson and Yannis Kevrekidis
MSM Resource - Models, Tools, Databases:
Multiscale Modeling of Wound Healing
PI: Jason Haugh
Grant No.:
U01EB018816
Project collaborators:
James Bear (UNC-Chapel Hill), Timothy Elston (UNC-Chapel Hill)
MSM Resource - Models, Tools, Databases:
Multiscale modeling to map cardiac electrophysiology between species
PI: Eric Sobie
Grant No.:
U01 HL 136297
Project collaborators:
David Christini
MSM Resource - Models, Tools, Databases:
PI: David Christini
Grant No.:
U01HL136297
Project collaborators:
Eric Sobie
MSM Resource - Models, Tools, Databases:
Multiscale Models of Cardiac Growth, Remodeling, and Myocardial Infarction
PI: Jeff Holmes
Grant No.:
U01 HL-120862
Project collaborators:
MSM Resource - Models, Tools, Databases:
MULTISCALE MODELS OF NEURAL POPULATION CONTROL IN SPINAL CORD
PI: Simon Giszter
Grant No.:
U01 EB021921
Project collaborators:
Terence Sanger
MSM Resource - Models, Tools, Databases:
Key Personnel: Simon Giszter
Grant No.:
U01 EB021921
Project collaborators:
Terence D Sanger
MSM Resource - Models, Tools, Databases:
Multiscale Models of Wound Cell Plasticity for Regeneration
PI: Qing Nie
Grant No.:
U01AR073159
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multiscale Molecular Systems Biology- Reconstruction and Model Optimization
PI: Ronan Fleming
Grant No.:
SC0010429
Project collaborators:
Michael Saunders (Stanford University), Bernhard Palsson (UCSD)
MSM Resource - Models, Tools, Databases:
Multiscale Molecular Systems Biology: Reconstruction and Model Optimization
PI: Michael Saunders
Grant No.:
U01GM102098
Project collaborators:
Bernhard Palsson, Ronan Fleming, Ines Thiele
MSM Resource - Models, Tools, Databases:
Multiscale Multiphysics Model of Thrombus Biomechanics in Aortic Dissection
PI: Jay Humphrey
Grant No.:
U01HL116323
Project collaborators:
George Karniadakis
MSM Resource - Models, Tools, Databases:
PI: Jay Humphrey
Grant No.:
U01 HL116323
Project collaborators:
George Karniadakis
MSM Resource - Models, Tools, Databases:
Multiscale spatiotemporal modeling of cardiac mitochondria
PI: Mohsin Jafri
Grant No.:
1U01HL116321-01A1
Project collaborators:
PHD William Jonathan Lederer (contact), MD CARMEN A. MANNELLA
MSM Resource - Models, Tools, Databases:
PI: W. Jonathan Lederer
Grant No.:
1U01HL116321
Project collaborators:
MOHSIN Saleet JAFRI, PHD William Jonathan Lederer (contact), MD CARMEN A. MANNELLA, PhD
MSM Resource - Models, Tools, Databases:
Multiscale theory of synapse function with model reduction by machine learning
PI: Eric Mjolsness
Grant No.:
Project collaborators:
MSM Resource - Models, Tools, Databases:
Multiscale, Transport-Dependent NO Signaling: Cells to Vascular Networks
Key Personnel: Kenneth Barbee
Grant No.:
1U01HL116256-01A1
Project collaborators:
Dov Jaron, Donald Buerk
MSM Resource - Models, Tools, Databases:
Multiscale, Transport-Dependent NO Signalling: Cells to Vascular Networks
Key Personnel: Donald Buerk
Grant No.:
U01 HL116256
Project collaborators:
Dov Jaron, Ken Barbee
MSM Resource - Models, Tools, Databases:
N/A (from NCI CSBC program)
PI: Aaron Meyer
Grant No.:
N/A
Project collaborators:
MSM Resource - Models, Tools, Databases:
N/A (Working with OpenSim in BioMch working group)
Key Personnel: Jacqueline Tran
Grant No.:
N/A (Working with OpenSim in BioMch working group)
Project collaborators:
MSM Resource - Models, Tools, Databases:
National Resource for Cell Analysis and Modeling
PI: Leslie Loew
Grant No.:
P41GM103313
Project collaborators:
MSM Resource - Models, Tools, Databases:
Neural Basis of Causal Inference
PI: Jan Drugowitsch
Grant No.:
U19NS118246
Project collaborators:
MSM Resource - Models, Tools, Databases:
Neural circuit control of fluid and solute clearance during sleep
PI: Douglas Kelley
Grant No.:
U19NS128613
Project collaborators:
Maiken Nedergaard, Patrick Drew, Laura Lewis, Hajime Hirase
MSM Resource - Models, Tools, Databases:
Neuronal mechanisms of human episodic memory
Other: Michael Kyzar
Grant No.:
Project collaborators:
MSM Resource - Models, Tools, Databases:
Neuronal population dynamics within and across cortical areas
PI: Matthew Smith
Grant No.:
EB026953
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Byron Yu
Grant No.:
BRAINR01EB026953
Project collaborators:
Doiron, Brent, Smith, Matthew
MSM Resource - Models, Tools, Databases:
Neurostimulation and Recording of Real World Spatial Navigation in Humans
Other: Sonja Hiller
Grant No.:
NS117838
Project collaborators:
Nanthia Suthana, Barbara Knowlton, Itzhak Fried, John Stern, Dawn Eliashiv, Matthias Stangl, Vikram Rao, Cory Inman
MSM Resource - Models, Tools, Databases:
New methods and theories to interrogate organizational principles from single cell to neuronal networks
PI: Mara Dierssen
Grant No.:
TMMEB28159
Project collaborators:
MSM Resource - Models, Tools, Databases:
Key Personnel: Linus Manubens-Gil
Grant No.:
BRAINR01EB028159
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Bing Ye
Grant No.:
1R01EB028159
Project collaborators:
Mara Dierssen
MSM Resource - Models, Tools, Databases:
NIAMS: CORT Innovations to Assess and Forestall Post-Traumatic Osteoarthritis
Key Personnel: Bruce Ayati
Grant No.:
1 p50 AR055533
Project collaborators:
James Martin, Joseph Buckwalter
MSM Resource - Models, Tools, Databases:
NIH - Age Dependent Mecahnical Ventilator induced Inflammation: Modeling and Experiments
PI: Ramana Pidaparti
Grant No.:
NIH (R01AG041823)
Project collaborators:
Angela Reynolds and Rebecca Heise
MSM Resource - Models, Tools, Databases:
NIH MIDAS and DTRA CNIMS
PI: Madhav Marathe
Grant No.:
Dont remember
Project collaborators:
MSM Resource - Models, Tools, Databases:
No project title
Key Personnel: Blanca Pineda
Grant No.:
No grant number
Project collaborators:
MSM Resource - Models, Tools, Databases:
None
PI: Anahita Akbari
Grant No.:
None
Project collaborators:
MSM Resource - Models, Tools, Databases:
NOVEL BAYESIAN LINEAR DYNAMICAL SYSTEMS-BASED METHODS FOR DISCOVERING HUMAN BRAIN CIRCUIT DYNAMICS IN HEALTH AND DISEASE
PI: Vinod Menon
Grant No.:
R01EB022907
Project collaborators:
MSM Resource - Models, Tools, Databases:
OpenSim Enhancements to Enable Computational Design of Personalized Treatments for Movement Impairments
PI: B.J. Fregly
Grant No.:
R01EB030520
Project collaborators:
MSM Resource - Models, Tools, Databases:
Operationalizing Behavioral Theory for mHealth: Dynamics, Context, and Personalization
PI: Donna Spruijt-Metz
Grant No.:
U01CA229445
Project collaborators:
Benjamin Marlin, Pedja Klasnja, Misha Pavel, Eric Hekler, Daniel Rivera
MSM Resource - Models, Tools, Databases:
OPERATIONALIZING BEHAVIORAL THEORY FOR MHEALTH: DYNAMICS, CONTEXT, AND PERSONALIZATION
PI: Benjamin Marlin
Grant No.:
1 U01 CA229445 01
Project collaborators:
Donna Spruijt-Metz, Predrag Klasnja, Eric Hekler, Daniel Rivera, Misha Pavel
MSM Resource - Models, Tools, Databases:
Oxytocin modulation of neural circuit function and behavior
Key Personnel: Alisa Surkis
Grant No.:
U19 NS107616
Project collaborators:
MSM Resource - Models, Tools, Databases:
Oxytocin Modulation of Neural Circuit Function and Behavior
PI: Robert Froemke
Grant No.:
NS107616
Project collaborators:
MSM Resource - Models, Tools, Databases:
Key Personnel: Luisa Schuster
Grant No.:
1U19NS107616-01
Project collaborators:
MSM Resource - Models, Tools, Databases:
Key Personnel: Peter Petersen
Grant No.:
BRAINU19NS107616
Project collaborators:
MSM Resource - Models, Tools, Databases:
Peri-procedural transmural electrophysiological imaging of scar-related ventricular tachycardia
PI: Linwei Wang
Grant No.:
R01HL145590-01
Project collaborators:
MSM Resource - Models, Tools, Databases:
Predicting Cell Deformation from Body Level Mechanical Loads
PI: Ahmet Erdemir
Grant No.:
R01EB009643
Project collaborators:
MSM Resource - Models, Tools, Databases:
Predictive modeling of bioelectric activity on mammalian multilayered neuronal stimulation
PI: Gianluca Lazzi
Grant No.:
U01EB025830
Project collaborators:
Ted Berger
MSM Resource - Models, Tools, Databases:
PI: Theodore Berger
Grant No.:
U01GM104604
Project collaborators:
Gianluca Lazzi
MSM Resource - Models, Tools, Databases:
PREDICTIVE MODELING OF BIOELECTRIC ACTIVITY ON MAMMALIAN MULTILAYERED NEURONAL STRUCTURES IN THE PRESENCE OF SUPRAPHYSIOLOGICAL ELECTRIC FIELDS
Trainee: Shayan Farzad
Grant No.:
U01EB025830
Project collaborators:
MSM Resource - Models, Tools, Databases:
Predictive Modeling of Bioelectric Activity on Mammalian Multilayered Neuronal Structures in the Presence of Supraphysiological Electric Fields
Key Personnel: Jean-Marie Bouteiller
Grant No.:
GM104604
Project collaborators:
Gianluca Lazzi, Ted Berger
MSM Resource - Models, Tools, Databases:
Key Personnel: Gene Yu
Grant No.:
5U01EB025830
Project collaborators:
MSM Resource - Models, Tools, Databases:
PREDICTIVE MULTISCALE IN SILICO CARDIO-PHARMACOLOGY
Key Personnel: Igor Vorobyov
Grant No.:
5U01HL126273-03
Project collaborators:
MSM Resource - Models, Tools, Databases:
PI: Colleen Clancy
Grant No.:
1U01HL126273-01A1
Project collaborators:
Vladimir Yarov-Yarovoy, Robert D. Harvey
MSM Resource - Models, Tools, Databases:
Predictive multiscale in silico cardio-pharmacology
Key Personnel: Parya Aghasafari
Grant No.:
U01HL126273
Project collaborators:
MSM Resource - Models, Tools, Databases:
Predictive Multiscale in Silico Cardio-Pharmacology
Key Personnel: Pei-Chi Yang
Grant No.:
5U01HL126273-04
Project collaborators:
MSM Resource - Models, Tools, Databases:
Predictive Multiscale Modeling of Microbial Consortia Biofilms
PI: Ross Carlson
Grant No.:
U01EB019416
Project collaborators:
MSM Resource - Models, Tools, Databases:
Quantifying Causality for Neuroscience
PI: Konrad Kording
Grant No.:
EB028162
Project collaborators:
MSM Resource - Models, Tools, Databases:
Readout and control of spatiotemporal neuronal codes
PI: Wolfgang Losert
Grant No.:
1U19NS107464
Project collaborators:
MSM Resource - Models, Tools, Databases:
Real-time Statistical Algorithms for Controlling Neural Dynamics and Behavior
PI: Il Memming Park
Grant No.:
EB026946
Project collaborators:
jonathan pillow, alfredo fontanini, carlos brody
MSM Resource - Models, Tools, Databases:
Real-time statistical algorithms for controlling neural dynamics and behavior
PI: Jonathan Pillow
Grant No.:
1R01EB026946
Project collaborators:
Il Memming Park
MSM Resource - Models, Tools, Databases:
Recruitment of Dr. Benjamin Fregly, Established Investigator
Key Personnel: Andrew Baines
Grant No.:
RR170026
Project collaborators:
MSM Resource - Models, Tools, Databases:
Reproducible Modeling Center
PI: Herbert Sauro
Grant No.:
NA
Project collaborators:
Jonathan Karr, Ion Moraru, David Nickerson, John Gennari
MSM Resource - Models, Tools, Databases:
Reverse Engineering the Brain Stem Circuits that Govern Exploratory Behavior
Key Personnel: Yoav Freund
Grant No.:
BRAINNS107466
Project collaborators:
MSM Resource - Models, Tools, Databases:
Robust modeling of within- and across-area population dynamics using recurrent neural networks
PI: Chethan Pandarinath
Grant No.:
Project collaborators:
MSM Resource - Models, Tools, Databases:
Robust Predictors of Mania and Psychosis
PI: Justin Baker
Grant No.:
U01MH116925
Project collaborators:
MSM Resource - Models, Tools, Databases:
Sensorimotor processing, decision making, and internal states: towards a realistic multiscale circuit model of the larval zebrafish brain, N/A
PI: Florian Engert
Grant No.:
5U01NS090449
Project collaborators:
Vital capacity
MSM Resource - Models, Tools, Databases:
PI: Florian Engert
Grant No.:
NA
Project collaborators:
Vital capacity
MSM Resource - Models, Tools, Databases:
Sensory motor transformations in human cortex
PI: Richard Andersen
Grant No.:
BRAINU01NS123127
Project collaborators:
MSM Resource - Models, Tools, Databases:
Sequence Learning in Recurrent Neural Networks
PI: Harel Shouval
Grant No.:
R01EB022891
Project collaborators:
Nicolas Brunel
MSM Resource - Models, Tools, Databases:
Simulation guidance of ablation therapy for persistent atrial fibrillation
Key Personnel: Patrick Boyle
Grant No.:
U01-HL-141074
Project collaborators:
Natalia Trayanova, Hugh Calkins, Adityo Prakosa
MSM Resource - Models, Tools, Databases:
Software for Practical Annotation and Exchange of Virtual Anatomy
PI: Andinet Enquobahrie
Grant No.:
R01EB025212
Project collaborators:
MSM Resource - Models, Tools, Databases:
Spinal Circuits for the Control of Dexterous Movement
Trainee: Graziana Gatto
Grant No.:
1U19NS11295901
Project collaborators:
MSM Resource - Models, Tools, Databases:
State-dependent Decision-making in Brainwide Neural Circuits
Key Personnel: Hannah Bayer
Grant No.:
U19NS123716
Project collaborators:
MSM Resource - Models, Tools, Databases:
Stochastic Simulation Service: A Cloud Computing Framework for Modeling and Simulation of Stochastic Biochemical Systems
Key Personnel: Brian Drawert
Grant No.:
R01EB014877
Project collaborators:
Linda Petzold
MSM Resource - Models, Tools, Databases:
StochSS: A Next-Generation Toolkit for Simulation-Driven Biological Discovery
PI: Linda Petzold
Grant No.:
2R01EB01487704A1
Project collaborators:
Andreas Hellander; Uppsala University, Brian Drawert; UNC Asheville
MSM Resource - Models, Tools, Databases:
Systems Biology of Hypertrophic Heart Disease from Molecular Pathways to Organ System
Key Personnel: Ali Khalilimeybodi
Grant No.:
R01HL137100
Project collaborators:
MSM Resource - Models, Tools, Databases:
Systems Modeling Guided Bone Regeneration
PI: Xiaobo Zhou
Grant No.:
1U01AR06939501A1
Project collaborators:
YANG, YUNZHI
MSM Resource - Models, Tools, Databases:
Systems Modeling Guided Bone regeneration
PI: Yunzhi Yang
Grant No.:
1U01AR069395
Project collaborators:
Xiaobo Zhou
MSM Resource - Models, Tools, Databases:
SYSTEMS PHARMACOLOGY MODEL FOR SPATIAL CONTROL OF CARDIAC FIBROSIS
PI: Jeffrey Saucerman
Grant No.:
5R01HL137755
Project collaborators:
Jeffrey Holmes, Shayn Peirce-Cottler
MSM Resource - Models, Tools, Databases:
The Center for Innovation in Intensive Longitudinal Studies (CIILS)
PI: Sy-Miin Chow
Grant No.:
U24 EB026436-01
Project collaborators:
NA
MSM Resource - Models, Tools, Databases:
Tools for modeling state-dependent sensory encoding by neural populations across spatial and temporal scales
PI: Stephen David
Grant No.:
BRAINR01EB028155
Project collaborators:
MSM Resource - Models, Tools, Databases:
Toward a Theory for Macroscopic Neural Computation Based on Laplace Transform
PI: Marc Howard
Grant No.:
EB022864
Project collaborators:
Michael Hasselmo
MSM Resource - Models, Tools, Databases:
Towards a Complete Description of the Circuitry Underlying Sharp Wave-Mediated Memory Replay
PI: Mark Schnitzer
Grant No.:
Project collaborators:
MSM Resource - Models, Tools, Databases:
Key Personnel: Aaron Milstein
Grant No.:
U19NS104590
Project collaborators:
MSM Resource - Models, Tools, Databases:
TOWARDS A COMPLETE DESCRIPTION OF THE CIRCUITRY UNDERLYING SHARP WAVE-MEDIATED MEMORY REPLAY
Other: Ben Dichter
Grant No.:
NS104590
Project collaborators:
MSM Resource - Models, Tools, Databases:
Towards a unified framework for dopamine signaling in the striatum
Trainee: Akshay Jaggi
Grant No.:
BRAINU19NS113201
Project collaborators:
MSM Resource - Models, Tools, Databases:
Transport Phenomena in the Lymphatic System
PI: James Moore
Grant No.:
U01HL123420
Project collaborators:
David Zawieja
MSM Resource - Models, Tools, Databases:
Key Personnel: Michael Moreno
Grant No.:
HL123420
Project collaborators:
MSM Resource - Models, Tools, Databases:
U01HL114476
Key Personnel: He Li
Grant No.:
N/A
Project collaborators:
MSM Resource - Models, Tools, Databases:
Uncovering Population-Level Cellular Relationships to Behavior via Mesoscale Networks
PI: David Carlson
Grant No.:
BRAINEB026937
Project collaborators:
Guillermo Saprio, Kafui Dzirasa
MSM Resource - Models, Tools, Databases:
USC Physical Sciences-Oncology Center
Government Program Official: Sean Hanlon
Grant No.:
U54CA143907
Project collaborators:
MSM Resource - Models, Tools, Databases:
VPOP (Virtual Populations for Obesity Prevention)
PI: Bruce Lee
Grant No.:
U01HD086861
Project collaborators:
MSM Resource - Models, Tools, Databases:
Other: Sarah Rebbert
Grant No.:
U01HD086861
Project collaborators:
MSM Resource - Models, Tools, Databases:
Wellcome Leap ΔTissue Program
Trainee: Pariksheet Nanda
Grant No.:
Project collaborators:
MSM Resource - Models, Tools, Databases:
Operationalizing Behavioral Theory for mHealth: Dynamics, Context, and Personalization
Key Personnel: Misha Pavel
Grant No.:
1U01CA229445-01
Project collaborators:
MSM Resource - Models, Tools, Databases:
“Integrating Bioinformatics into Multiscale Models for Hepatocellular Carcinoma”
Key Personnel: Gaurav Sharma
Grant No.:
U01CA212007
Project collaborators:
MSM Resource - Models, Tools, Databases: