All attendees will have access to a computer workstation while in the computer lab. If you prefer, you may use your own laptop (Windows, MacOS or Linux) for your coursework. There are no ethernet switches available in the computer lab, so you must use WiFi if you wish to use your laptop (connect instructions will be provided and access is complementary).
Software to be used during the course
- JSim software version 2.02
https://www.imagwiki.nibib.nih.gov/physiome/jsim/download/
Windows, MacOS, Linux - Matlab
http://mathworks.com
Windows, MacOS, Linux
fee required, or use trial version - Antimony 2.0.0
https://www.imagwiki.nibib.nih.gov/sites/default/files/jsim/course/antimonyInstaller_v2.0.0.exe
Windows only - SemGen version 1.2
http://www.bhi.washington.edu/research/SemBioProcess/SemGen/SemGen_v1.2…
Windows: unzip zip file - this unpacks the SemGen_v1.2 folder. Open this folder and double click the SemGen.jar file.
MacOS: unzip zip file - this unpacks the SemGen_v1.2 folder. Open this folder and double click the SemGen application file (.app). - Systems Biology Workbench
http://sourceforge.net/projects/sbw/files/sbw/2.8.2/SBW-2.8.2-win32-ins… r.exe/download
Windows only
Once SBW is installed, do the following to ensure you get the latest version:- Go to start menu
- Find Systems Biology Workbench, select
- Find Utilities, select
- Select "Update SBW"
- Return to NSR Modeling Course page.
Model development and archiving support at https://www.imagwiki.nibib.nih.gov/physiome provided by the following grants: NIH U01HL122199 Analyzing the Cardiac Power Grid, 09/15/2015 - 05/31/2020, NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.