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CellChat: Inference and analysis of cell-cell communication using CellChat

What is being modeled?
Cell-cell communications in scRNA-seq data
Description & purpose of resource

Inferring, clustering, and downstream analysis for cell-cell communications in scRNA-seq data.

Spatial scales
cellular
tissue
organ
Temporal scales
10-6 - 10-3 s
10-3 - 1 s
1 - 103 s
hours
days
This resource is currently
mature and useful in ongoing research
Link to Resource Credibility Assessment
CellChat: Inference and analysis of cell-cell communication using CellChat
Key publications (e.g. describing or using resource)

Jin, Suoqin, Christian F. Guerrero-Juarez, Lihua Zhang, Ivan Chang, Raul Ramos, Chen-Hsiang Kuan, Peggy Myung, Maksim V. Plikus, and Qing Nie. "Inference and analysis of cell-cell communication using CellChat." Nature communications 12, no. 1 (2021): 1-20.

DOI link to publication describing this resource

https://doi.org/10.1038/s41467-021-21246-9

Link to resource
CellChat package
CellChat online explorer
Collaborators
Qing Nie (PI)
PI contact information
qnie@uci.edu
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