JSim CellML Models Page
This page allows users to run models from the CellML model archive under JSim. To run these models online, you must have Java installed on your computer. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since CellML models do not specify simulation time length or delta, these must be set by the user before running the model.
Users are strongly advised to read Running CellML Models under JSim before running CellML models under JSim.
Currently available models
- Number of CellML v1.0 models in the archive: 910
- Number of those models runnable under JSim: 840
- Number of those models passing unit balance: 698
- Models not passing unit balance are indicated by
Displaying 421 - 440 of 486
CML0427 : Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry.
- teusink_passarge_reijenga_esgalhado_vanderweijden_schepper_walsh_bakker_vandam_w:
- teusink_annotated_2000: [View MML]
- teusink_passarge_reijenga_esgalhado_vanderweijden_schepper_walsh: [View MML]
CML0428 : A pharmacodynamic model for the time course of tumor shrinkage by gemcitabine + carboplatin in non-small cell lung cancer patients
- tham_2008:
- tham_2008: [View MML]
CML0429 : Inner medullary lactate production and accumulation: a vasa recta model
- thomas_2000:
- thomas_2000: [View MML]
CML0430 : Rapid kinetics of alpha 2-adrenergic inhibition of adenylate cyclase. Evidence for a distal rate-limiting step
- thomsen_neubig_1989:
- thomsen_neubig_1989: [View MML]
CML0431 : Modelling the Insulin-Glucose Feedback System: The Significance of Pulsatile Insulin Secretion
- tolic_mosekilde_sturis_2000:
- tolic_mosekilde_sturis_2000: [View MML]
CML0432 : NFAT functions as a working memory of Ca2+ signals in decoding Ca2+ oscillation
- tomida_hirose_takizawa_shibasaki_iino_2003:
- tomida_hirose_takizawa_shibasaki_iino_2003: [View MML]
CML0433 : A Model of Beta-Cell Mass, Insulin, and Glucose Kinetics: Paythways to Diabetes
- topp_promislow_devries_miura_finegood_2000:
- topp_promislow_devries_miura_finegood_2000: [View MML]
CML0434 : A metabolite-sensitive, thermodynamically-constrained model of cardiac cross-bridge cycling: Implications for force development during ischemia
- tran_2009:
- tran_2009: [View MML]
CML0435 : A Thermodynamic Model of the Cardiac Sarcoplasmic/Endoplasmic Ca(2+) (SERCA) Pump
- tran_smith_loiselle_crampin_2009:
- tran_smith_loiselle_crampin_2009: [View MML]
- tran_smith_loiselle_crampin_2009_variant01: [View MML]
CML0436 : Modeling the Cell Division Cycle:cdc2 and Cyclin Interactions
- tyson_1991:
- tyson_1991: [View MML]
CML0437 : A Simple Model of Circadian Rhythms Based on Dimerization and Proteolysis of PER and TIM
- tyson_hong_thron_novak_1999:
- tyson_hong_thron_novak_1999: [View MML]
CML0438 : Robust oscillations within the interlocked feedback model of Drosophila circadian rhythm
- ueda_hagiwara_kitano_2001:
- ueda_hagiwara_kitano_2001: [View MML]
CML0439 : Adenine nucleotide-creatine-phosphate module in myocardial metabolic system explains fast phase of dynamic regulation of oxidative phosphorylation
- vanbeek_2007:
- vanbeek_2007: [View MML]
CML0440 : Computer simulation of arrhythmias in a network of coupled excitable elements
- vancapelle_durrer_1980:
- vancapelle_durrer_1980: [View MML]
CML0441 : The Heartbeat Considered as a Relaxation Oscillation, and an Electrical Model of the Heart.
- vanderpol_vandermark_1928:
- vanderpol_vandermark_1928: [View MML]
CML0442 : Amplitude-Dependent Spike-Broadening and Enhanced Ca2+ Signaling in GnRH-Secreting Neurons
- vangoor_lebeau_krsmanovic_sherman_catt_stojilkovic_2000:
- vangoor_lebeau_krsmanovic_sherman_catt_stojilkovic_2000: [View MML]File: vangoor_lebeau_krsmanovic_sherman_catt_stojilkovic_2000.mod does Not exist!
CML0443 : A multiscale model to investigate circadian rhythmicity of pacemaker neurons in the suprachiasmatic nucleus
- vasalou_henson_2010:
- vasalou_2010: [View MML]
CML0444 : In Vivo Dynamics of the Pentose Phosphate Pathway in Saccharomyces cerevisiae
- vaseghi_baumeister_rizzi_reuss_1999:
- vaseghi_baumeister_rizzi_reuss_1999: [View MML]
CML0445 : A Biochemical Model of Matrix Metalloproteinase 9 Activation and Inhibition
- vempati_karagiannis_popel_2007:
- vempati_karagiannis_popel_2007: [View MML]
CML0446 : Regulation of mitochondrial respiration in heart cells analyzed by reaction-diffusion model of energy transfer
- vendelin_kongas_saks_2000:
- vendelin_kongas_saks_2000: [View MML]File: vendelin_kongas_saks_2000.mod does Not exist!