JSim CellML Models Page
This page allows users to run models from the CellML model archive under JSim. To run these models online, you must have Java installed on your computer. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since CellML models do not specify simulation time length or delta, these must be set by the user before running the model.
Users are strongly advised to read Running CellML Models under JSim before running CellML models under JSim.
Currently available models
- Number of CellML v1.0 models in the archive: 910
- Number of those models runnable under JSim: 840
- Number of those models passing unit balance: 698
- Models not passing unit balance are indicated by
Displaying 41 - 60 of 486
CML0041 : Models of Respiratory Rhythm Generation in the Pre-Botzinger Complex. I. Bursting Pacemaker Neurons
CML0043 : Dynamical modeling of syncytial mitotic cycles in Drosophila embryos
- calzone_thieffry_tyson_novak_2007:
- calzone_thieffry_tyson_novak_2007: View MML
CML0044 : Functions of Stretch Activation in Heart Muscle
- campbell_chandra_2006:
- campbell_chandra_2006: View MML
CML0045 : A model for the control of testosterone secretion
- cartwright_husain_1986:
- cartwright_husain_1986: View MML
CML0046 : A kinetic model of the thiazide-sensitive Na-Cl cotransporter
- chang_fujita_1999:
- chang_fujita_1999: View MML
CML0047 : A numerical model of acid-base transport in rat distal tubule
CML0048 : A numerical model of the renal distal tubule
- chang_fujita_b_1999:
- chang_fujita_b_1999: View MML
CML0049 : An integrated study of Threonine-pathway enzyme kinetics in Escherichia coli
- chassagnole_rais_quentin_fell_mazat_2001:
- chassagnole_rais_quentin_fell_mazat_2001: View MML
CML0050 :
- >chauhan_legewie_westermark_lorenzen_herzel_2008:
- chauhan_2008: View MML
CML0053 : Integrative Analysis of Cell Cycle Control in Budding Yeast
- chen_calzone_csikasznagy_cross_novak_tyson_2004:
- chen_calzone_csikasznagy_cross_novak_tyson_2004: View MML
CML0054 : Kinetic Analysis of a Molecular Model of the Budding Yeast Cell Cycle
- chen_csikasz-nagy_gyorffy_val_novak_tyson_2000:
- chen_csikasz-nagy_gyorffy_val_novak_tyson_2000: View MML
CML0055 : Virtual muscle: a computational approach to understanding the effects of muscle properties on motor control
- cheng_brown_loeb_2000:
- cheng_brown_loeb_2000: View MML
CML0056 : Theoretical analysis of biochemical pathways of nitric oxide release from vascular endothelial cells
- chen_popel_2006:
- chen_popel_2006: View MML
CML0057 : Vascular and perivascular nitric oxide release and transport: biochemical pathways of neuronal nitric oxide synthase (NOS1) and endothelial nitric oxide synthase (NOS3)
CML0058 : Mathematical Model of the Morphogenesis Checkpoint in Budding Yeast
- ciliberto_novak_tyson_2003:
- ciliberto_novak_tyson_2003: View MML
CML0059 : A kinetic model of the cyclin E/Cdk2 developmental timer in Xenopus
- ciliberto_petrus_tyson_sible_2003:
- ciliberto_petrus_tyson_sible_2003: View MML
CML0060 : Mathematical Model for Early Development of the Sea Urchin Embryo
- ciliberto_tyson_2000:
- ciliberto_tyson_2000: View MML
CML0061 : Cellular consequences of HERG mutations in the long QT syndrome: precursors to sudden cardiac death
- clancy_rudy_2001:
- clancy_rudy_2001: View MML
- clancy_rudy_2001_IKrN629D_Epi_seconds_flooristim: View MML
- clancy_rudy_2001_IKrN629D_Mcell_seconds_flooristim: View MML
- clancy_rudy_2001_IKrR56Q_Epi_seconds_flooristim: View MML
- clancy_rudy_2001_IKrR56Q_Mcell_seconds_flooristim: View MML
- clancy_rudy_2001_IKrT474I_Epi_seconds_flooristim: View MML
- clancy_rudy_2001_IKrT474I_Mcell_seconds_flooristim: View MML
- clancy_rudy_2001_INaKPQ_Epi_seconds_flooristim: View MML
- clancy_rudy_2001_WT_Mcell_seconds_flooristim: View MML