JSim CellML Models Page | Interagency Modeling and Analysis Group

This page allows users to run models from the CellML model archive under JSim. To run these models online, you must have Java installed on your computer. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since CellML models do not specify simulation time length or delta, these must be set by the user before running the model.

Users are strongly advised to read Running CellML Models under JSim before running CellML models under JSim.

Currently available models

Number of CellML v1.0 models in the archive: 910
Number of those models runnable under JSim: 840
Number of those models passing unit balance: 698
Models not passing unit balance are indicated by

Displaying 61 - 80 of 486

CML0062 : Na Channel Mutation That Causes Both Brugada Syndrome and Long-QT Syndrome Phenotypes: A Simulation Study of Mechanism

clancy_rudy_2002:
- clancy_rudy_2002: View MML
- clancy_rudy_2002_INa1795insD_Endo_seconds_flooristim: View MML
- clancy_rudy_2002_INa1795insD_Epi_seconds_flooristim: View MML
- clancy_rudy_2002_INa1795insD_Mcell_seconds_flooristim: View MML
- clancy_rudy_2002_WT_Endo_seconds_flooristim: View MML
- clancy_rudy_2002_WT_Mcell_seconds_flooristim: View MML

CML0063 : An integrative dynamic model of brain energy metabolism using in vivo neurochemical measurements

cloutier_2009:
- cloutier_2009: View MML

CML0064 : The control systems structures of energy metabolism

cloutier_wellstead_2009:
- cloutier_2009_a: View MML
- cloutier_2009_b: View MML
- cloutier_2009_c: View MML
- cloutier_2009_d: View MML
- cloutier_2009_e: View MML
- cloutier_2009_f: View MML

CML0065 : Quantitive Analysis of Mitochondrial Ca2+ Uptake and Release Pathways in Sympathetic Neurons Reconstruction of the Recovery after Depolarisation-evoked [Ca2+] Elevations

colegrove_albrecht_friel_2000:
- colegrove_albrecht_friel_2000: View MML

CML0066 : Restriction point control of the mammalian cell cycle via the cyclin E/Cdk2:p27 complex

conradie_bruggeman_ciliberto_csikasz-nagy_novak_westerhoff_snoep_2010:
- conradie_2010: View MML

CML0067 :

cooling_hunter_crampin_2007:
- cooling_hunter_crampin_2007: View MML

CML0068 :

>cooling_hunter_crampin_2009:
- calcineurin_DualProtocol: View MML
- calcineurin_ShenProtocol: View MML
- calcineurin_TomidaProtocol: View MML
- calcium_DualProtocol: View MML
- calcium_ShenProtocol: View MML
- calcium_TomidaProtocol: View MML
- NFATCycling_DualProtocol: View MML
- NFATCycling_ShenProtocol: View MML
- NFATCycling_TomidaProtocol: View MML
- NFATMyocyte_DualProtocol_Submodel: View MML
- NFATMyocyte_ShenProtocol_Submodel: View MML
- NFATMyocyte_TomidaProtocol_Submodel: View MML

CML0069 :

>cooling_hunter_crampin__2008:
- calcium: View MML
- extracellular_ligand: View MML
- Galpha: View MML
- GPCR_Cycle: View MML
- IP3: View MML
- IP3Submodel_Main: View MML
- IP3_degradation: View MML
- PIP2: View MML
- PLC_Cycle: View MML

CML0070 : Corrias, Buist, 2007

corrias_buist_2007:
- corrias_buist_2007: View MML

CML0071 : Quantitative cellular description of gastric slow wave activity

corrias_buist_2008:
- corrias_buist_2008: View MML

CML0072 : An Integrated Model of Cardiac Mitrochondrial Energy Metabolism and Calcium Dynamics

cortassa_aon_marban_winslow_orourke_2003:
- cortassa_aon_marban_winslow_orourke_2003: View MML

CML0073 : A mitochondrial oscillator dependent on reactive oxygen species

cortassa_aon_winslow_orourke_2004:
- cortassa_aon_winslow_orourke_2004: View MML

CML0074 : Modelling Cardiac Mechanical Properties In Three Dimensions

costa_holmes_mcculloch_2001:
- costa_holmes_mcculloch_2001: View MML

CML0075 : Ionic mechanisms underlying human atrial action potential properties: insights from a mathematical model

courtemanche_ramirez_nattel_1998:
- courtemanche_ramirez_nattel_1998: View MML

CML0076 : Metabolic Control Analysis of Glycerol Synthesis in Saccharomyces cerevisiae

cronwright_rohwer_prior_2002:
- cronwright_rohwer_prior_2002: View MML

CML0077 : Analysis of a generic model of eukaryotic cell-cycle regulation: budding yeast taken from the original model code

csilkasz_nagy_2006:
- csikasz_nagy_2006_budding_yeast_from_code: View MML
- csikasz_nagy_2006_budding_yeast_from_paper: View MML
- csikasz_nagy_2006_mammalian_from_code: View MML

CML0078 : Mathematical modeling of calcium homeostasis in yeast cells

cui_kaandorp_2006:
- cui_kaandorp_2006: View MML

CML0079 : Simulating Complex Calcium-Calcineurin Signaling Network

cui_kaandorp_2008:
- cui_kaandorp_2008: View MML

CML0080 : Simulating in vitro transcriptional response of zinc homeostasis system in Escherichia coli

cui_kaandorp_lloyd_2008:
- cui_kaandorp_lloyd_2008_a: View MML
- cui_kaandorp_lloyd_2008_b: View MML

CML0081 : A kinetic model of the branch-point between the methionine and threonine biosynthesis pathways in Arabidopsis thaliana

curien_ravanel_dumas_2003:
- curien_ravanel_dumas_2003: View MML