JSim Biomodels Page | Interagency Modeling and Analysis Group

This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.

Notes:

Models on this page require JSim version 2.03 or higher.
JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
Updated curated EMBL-EBI Biomodels on 24, April 2019.

Return to complete JSim model archives.

Currently available curated models

Number of models in this archive: 710
Number of models currently runnable under JSim: 643
Number of runnable models containing unsupported events: 130

Displaying 421 - 440 of 710

BIO0421 : Ratushny2012 ASSURE II

BIOMD0000000421: [View MML]

BIO0422 : Middleton2012 GibberellinSignalling

BIOMD0000000422: [View MML]

BIO0423 : Nyman2012 InsulinSignalling

BIOMD0000000423: [View MML]

BIO0424 : Faratian2009 - Role of PTEN in Trastuzumab resistance

BIOMD0000000424: [View MML]

BIO0425 : Tan2012 - Antibiotic Treatment, Inoculum Effect

BIOMD0000000425: [View MML]

BIO0426 : Mosca2012 - Central Carbon Metabolism Regulated by AKT

BIOMD0000000426: [View MML]

BIO0427 : Bianconi2012 - EGFR and IGF1R pathway in lung cancer

BIOMD0000000427: [View MML]

BIO0428 : Achcar2012 - Glycolysis in bloodstream form T. brucei

BIOMD0000000428: [View MML]

BIO0429 : Schaber2012 - Hog pathway in yeast

BIOMD0000000429: [JSim version not yet available]

BIO0430 : Sarma2012 - Interaction topologies of MAPK cascade (M4 K2 USEQ)

BIOMD0000000430: [View MML]

BIO0431 : Sarma2012 - Interaction topologies of MAPK cascade (M4 K2 PSEQ)

BIOMD0000000431: [View MML]

BIO0432 : Sarma2012 - Interaction topologies of MAPK cascade (M4 K2 QSS USEQ)

BIOMD0000000432: [View MML]

BIO0433 : Sarma2012 - Interaction topologies of MAPK cascade (M4 K2 QSS PSEQ)

BIOMD0000000433: [View MML]

BIO0434 : McAuley2012 - Whole-body Cholesterol Metabolism

BIOMD0000000434: [View MML]

BIO0435 : deBack2012 - Lineage Specification in Pancreas Development

BIOMD0000000435: [View MML]

BIO0436 : Gupta2009 - Eicosanoid Metabolism

BIOMD0000000436: [View MML]

BIO0437 : Tseng2012 - Circadian clock of N.crassa

BIOMD0000000437: [JSim version not yet available]

BIO0438 : Saeidi2012 - Quorum sensing device that produces GFP

BIOMD0000000438: [View MML]

BIO0439 : Smith2009 - RGS mediated GTP hydrolysis

BIOMD0000000439: [View MML]

BIO0440 : Sarma2012 - Oscillations in MAPK cascade (S1)

BIOMD0000000440: [View MML]