JSim Biomodels Page
This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.
Notes:
- Models on this page require JSim version 2.03 or higher.
- JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
- Updated curated EMBL-EBI Biomodels on 24, April 2019.
Return to complete JSim model archives.
Currently available curated models
- Number of models in this archive: 710
- Number of models currently runnable under JSim: 643
- Number of runnable models containing unsupported events: 130
Displaying 461 - 480 of 710
BIO0461 : Liebal2012 - B.subtilis transcription inhibition model
BIO0462 : Proctor2012 - Role of Amyloid-beta dimers in aggregation formation
BIO0463 : Heldt2012 - Influenza Virus Replication substanceUnits=substance timeUnits=time volumeUnits=volume
- BIOMD0000000463: [JSim version not yet available]
BIO0464 : Koo2013 - Shear stress induced calcium influx and eNOS activation - Model 1
BIO0465 : Koo2013 - Shear stress induced AKT and eNOS phosphorylation - Model 2
BIO0466 : Koo2013 - Shear stress induced eNOS expression - Model 3
BIO0467 : Koo2013 - Shear stress induced NO production - Model 4
BIO0468 : Koo2013 - Integrated shear stress induced NO production model
BIO0469 : Smallbone2013 - E.coli metabolic model with linlog rate law
BIO0470 : Smallbone2013 - E.coli metabolic model with modular rate law
BIO0471 : Smallbone2013 - Yeast metabolic model with linlog rate law
BIO0472 : Smallbone2013 - Yeast metabolic model with modular rate law
BIO0473 : Smallbone2013 - Yeast metabolic model with modular rate law, merged with Pritchard 2002
BIO0474 : Smith2013 - Regulation of Insulin Signalling by Oxidative Stress
BIO0475 : Amara2013 - PCNA ubiquitylation in the activation of PRR pathway
BIO0476 : Adams2012 - Locke2006 Circadian Rhythm model refined with Input Signal Light Function
BIO0477 : Mol2013 - Immune Signal Transduction in Leishmaniasis
BIO0478 : Besozzi2012 - Oscillatory regimes in the Ras/cAMP/PKA pathway in S.cerevisiae
BIO0479 : Croft2013 - GPCR-RGS interaction that compartmentalizes RGS activity
BIO0480 : Carbo2013 - Mucosal Immune Response during H.pylori Infection
- BIOMD0000000480: [JSim version not yet available]