JSim Biomodels Page
This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.
Notes:
- Models on this page require JSim version 2.03 or higher.
- JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
- Updated curated EMBL-EBI Biomodels on 24, April 2019.
Return to complete JSim model archives.
Currently available curated models
- Number of models in this archive: 710
- Number of models currently runnable under JSim: 643
- Number of runnable models containing unsupported events: 130
Displaying 541 - 560 of 710
BIO0541 : Yugi2014 - Insulin induced signalling (PFKL phosphorylation) - model 2
BIO0542 : Yuraszeck2010 - Vulnerabilities in the Tau Network in Tau Pathophysiology
- BIOMD0000000542: [JSim version not yet available]
BIO0543 : Qi2013 - IL-6 and IFN crosstalk model (non-competitive)
BIO0544 : Qi2013 - IL-6 and IFN crosstalk model
BIO0545 : Ouyang2014 - photomorphogenic UV-B signalling network
BIO0546 : Miao2010 - Innate and adaptive immune responses to primary Influenza A Virus infection
BIO0547 : Talemi2014 - Arsenic toxicity and detoxification mechanisms in yeast
BIO0548 : Sneppen2009 - Modeling proteasome dynamics in Parkinson's disease
- BIOMD0000000548: [JSim version not yet available]
BIO0549 : Baker2013 - Cytokine Mediated Inflammation in Rheumatoid Arthritis - Age Dependent
- BIOMD0000000549: [JSim version not yet available]
BIO0550 : Baker2013 - Cytokine Mediated Inflammation in Rheumatoid Arthritis
- BIOMD0000000550: [JSim version not yet available]
BIO0551 : Das2010 - Effect of a gamma-secretase inhibitor on Amyloid-beta dynamics
- BIOMD0000000551: [JSim version not yet available]
BIO0552 : Ehrenstein2000 - Positive-Feedback model for the loss of acetylcholine in Alzheimer's disease
- BIOMD0000000552: [JSim version not yet available]
BIO0553 : Ehrenstein1997 - The choline-leakage hypothesis in Alzheimer's disease
- BIOMD0000000553: [JSim version not yet available]
BIO0554 : Cloutier2009 - Brain Energy Metabolism
- BIOMD0000000554: [JSim version not yet available]
BIO0555 : Auer2010 - Correlation between lag time and aggregation rate in protein aggregation
- BIOMD0000000555: [JSim version not yet available]
BIO0556 : Ortega2013 - Interplay between secretases determines biphasic amyloid-beta level
- BIOMD0000000556: [JSim version not yet available]
BIO0557 : Reiterer2013 - pseudophosphatase STYX role in ERK signalling
BIO0558 : Cloutier2012 - Feedback motif for Parkinson's disease
BIO0559 : Ouzounoglou2014 - Modeling of alpha-synuclein effects on neuronal homeostasis
BIO0560 : Hui2014 - Age-related changes in articular cartilage