JSim Biomodels Page
This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.
Notes:
- Models on this page require JSim version 2.03 or higher.
- JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
- Updated curated EMBL-EBI Biomodels on 24, April 2019.
Return to complete JSim model archives.
Currently available curated models
- Number of models in this archive: 710
- Number of models currently runnable under JSim: 643
- Number of runnable models containing unsupported events: 130
Displaying 561 - 580 of 710
BIO0561 : Martins2013 - True and apparent inhibition of amyloid fribril formation
- BIOMD0000000561: [JSim version not yet available]
BIO0562 : Chaouiya2013 - EGF and TNFalpha mediated signalling pathway
BIO0563 : Pritchard2014 - plant-microbe interaction
BIO0564 : Gould2013 - Temperature Sensitive Circadian Clock
BIO0565 : Machado2014 - Curcumin production pathway in Escherichia coli
BIO0566 : Morris2008 - Fitting protein aggregation data via F-W 2-step mechanism
- BIOMD0000000566: [JSim version not yet available]
BIO0567 : Morris2009 - α-Synuclein aggregation variable temperature and pH
- BIOMD0000000567: [JSim version not yet available]
BIO0568 : Mueller2015 - Hepatocyte proliferation, T160 phosphorylation of CDK2
- BIOMD0000000568: [JSim version not yet available]
BIO0569 : Dutta-Roy2015 - Opening of the multiple AMPA receptor conductance states
BIO0570 : Aubert2002 - Coupling between Brain electrical activity, Metabolism and Hemodynamics
BIO0571 : Nishio2008 - Design of the phosphotransferase system for enhanced glucose uptake in E. coli.
BIO0572 : Costa2014 - Computational Model of L. lactis Metabolism
BIO0573 : Aguilera 2014 - HIV latency. Interaction between HIV proteins and immune response
BIO0574 : Lai2014 - Hemiconcerted MWC model of intact calmodulin with two targets
BIO0575 : Sass2009 - Approach to an α-synuclein-based BST model of Parkinson's disease
- BIOMD0000000575: [JSim version not yet available]
BIO0576 : Kolodkin2013 - Nuclear receptor-mediated cortisol signalling network
BIO0577 : Zhou2015 - Circadian clock with immune regulator NPR1
- BIOMD0000000577: [JSim version not yet available]
BIO0578 : Invergo2014 - Phototransduction cascade in mouse rod cells
BIO0579 : Sengupta2015 - Knowledge base model of human energy pool network (HEPNet)
BIO0580 : Sonntag2012 - mTOR model - IRS dependent regulation of AMPK by insulin