JSim Biomodels Page
This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.
Notes:
- Models on this page require JSim version 2.03 or higher.
- JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
- Updated curated EMBL-EBI Biomodels on 24, April 2019.
Return to complete JSim model archives.
Currently available curated models
- Number of models in this archive: 710
- Number of models currently runnable under JSim: 643
- Number of runnable models containing unsupported events: 130
Displaying 641 - 660 of 710
BIO0641 : Jaiswal2017 - Cell cycle arrest substanceUnits=substance timeUnits=time volumeUnits=volume
- BIOMD0000000641: [JSim version not yet available]
BIO0642 : Mufudza2012 - Estrogen effect on the dynamics of breast cancer
- BIOMD0000000642: [JSim version not yet available]
BIO0643 : Musante2017 - Switching behaviour of PP2A inhibition by ARPP-16 - mutual inhibitions substanceUnits=substance timeUnits=time volumeUnits=volume
BIO0644 : Musante2017 - Switching behaviour of PP2A inhibition by ARPP-16 - mutual inhibitions and PKA inhibits MAST3 substanceUnits=substance timeUnits=time volumeUnits=volume
BIO0645 : Musante2017 - Switching behaviour of PP2A inhibition by ARPP-16 - mutual inhibitions and PKA inhibits MAST3 and dominant negative effect substanceUnits=substance timeUnits=time volumeUnits=volume
BIO0646 : Barr2016 - All-or-nothing G1/S transition
BIO0647 : Kwang2003 - The influence of RKIP on the ERK signaling pathway
BIO0648 : Padala2017- ERK, PI3K/Akt and Wnt signalling network (normal)
BIO0650 : Owen1998 - Tumour treatment model
BIO0651 : Nguyen2016 - Feedback regulation in cell signalling: Lessons for cancer therapeutics
BIO0652 : Padala2017- ERK, PI3K/Akt and Wnt signalling network (PI3K mutated)
BIO0653 : Padala2017- ERK, PI3K/Akt and Wnt signalling network (bRaf mutated)
BIO0657 : Araujo2016 - Positive feedback in Cdk1 signalling keeps mitotic duration short and constant
BIO0658 : Lee2003 - Roles of APC and Axin in Wnt Pathway (without regulatory loop)
BIO0659 : Cursons2015 - Regulation of ERK-MAPK signaling in human epidermis
BIO0660 : Barr2017 - Dynamics of p21 in hTert-RPE1 cells
- BIOMD0000000660: [JSim version not yet available]
BIO0661 : Webb2002 - Fas/FasL mediated tumor T-cell interaction
BIO0663 : Wodarz2007 - HIV/CD4 T-cell interaction
BIO0664 : Muller2008 - Simplified MAPK activation Dynamics (Model B)
BIO0665 : Fallon2000 - Interleukin-2 dynamics