JSim Biomodels Page
This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.
Notes:
- Models on this page require JSim version 2.03 or higher.
- JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
- Updated curated EMBL-EBI Biomodels on 24, April 2019.
Return to complete JSim model archives.
Currently available curated models
- Number of models in this archive: 710
- Number of models currently runnable under JSim: 643
- Number of runnable models containing unsupported events: 130
Displaying 581 - 600 of 710
BIO0581 : DallePezze2012 - TSC-independent mTORC2 regulation
BIO0582 : DallePezze2014 - Cellular senescene-induced mitochondrial dysfunction
BIO0583 : Leber2015 - Mucosal immunity and gut microbiome interaction during C. difficile infection
BIO0584 : Mandlik2015 - Tristable genetic circuit of Leishmania
BIO0585 : Rateitschak2012 - Interferon-gamma (IFNγ) induced STAT1 signalling (PC IFNg100)
BIO0586 : Karapetyan2016 - Genetic oscillatory network - Activator Titration Circuit (ATC)
BIO0587 : Karapetyan2016 - Genetic oscillatory network - Repressor Titration Circuit (RTC)
BIO0588 : Benson2013 - Identification of key drug targets in nerve growth factor pathway
BIO0589 : Valero2016 - Ascorbate-Glutathione cycle in chloroplasts under light/dark conditions
- BIOMD0000000589: [JSim version not yet available]
BIO0590 : Hermansen2015 - denovo biosynthesis of pyrimidines in yeast
BIO0591 : Boehm2014 - isoform-specific dimerization of pSTAT5A and pSTAT5B
BIO0592 : Martinez-Sanchez2015 - T CD4+ lymphocyte transcriptional regulatory network
BIO0593 : Martinez-Sanchez2015 - T CD4+ lymphocyte transcriptional-signaling regulatory network
BIO0594 : Capuani2015 - Binding of Cbl and Gbr2 to EGFR (Multisite Phosphorylation Model - MPM)
BIO0595 : Capuani2015 - Binding of Cbl and Grb2 to EGFR (Early Activation Model - EAM)
BIO0596 : layout 0
BIO0597 : Flis2015 - Plant clock gene circuit (P2011.1.2 PLM 71 ver 1)
BIO0598 : Flis2015 - Plant clock gene circuit (P2011.2.1 PLM 71 ver 2)
BIO0599 : Coggins2014 - CXCL12 dependent recruitment of beta arrestin
BIO0600 : Cellière2011 - Plasticity of TGF-β Signalling