JSim Biomodels Page
This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.
Notes:
- Models on this page require JSim version 2.03 or higher.
- JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
- Updated curated EMBL-EBI Biomodels on 24, April 2019.
Return to complete JSim model archives.
Currently available curated models
- Number of models in this archive: 710
- Number of models currently runnable under JSim: 643
- Number of runnable models containing unsupported events: 130
Displaying 681 - 700 of 710
BIO0689 : Thiaville2016 - Folate pathway model (PanB overexpression)
BIO0690 : Thiaville2016 - Folate pathway model (PanB overexpression and THF regulation)
BIO0691 : Wolf2000 - Cellular interaction on glycolytic oscillations in yeast
BIO0692 : Phillips2003 - The Mechanism of Ras GTPase Activation by Neurofibromin
- BIOMD0000000692: [JSim version not yet available]
BIO0693 : Wang2008 - Mimicking the inhibitory effect of riluzole on membrane conductance in skeletal fibres
BIO0695 : FelixGarza2017 - Blue Light Treatment of Psoriasis (simplified)
BIO0696 : Boada2016 - Incoherent type 1 feed-forward loop (I1-FFL)
BIO0697 : Ciliberto2003 - CyclinE / Cdk2 timer in the cell cycle of Xenopus laevis embryo
BIO0698 : Reed2004 - Methionine Cycle
BIO0699 : Caydasi2012 - Regulation of Tem1 by the GAP complex in spindle position cell cycle checkpoint - Ubiquitous association model
BIO0700 : Heldt2018 - Proliferation-quiescence decision in response to DNA damage
- BIOMD0000000700: [JSim version not yet available]
BIO0702 : Caydasi2012 - Regulation of Tem1 by the GAP complex in Spindle Position Checkpoint - Ubiquitous inactive model
BIO0703 : Diedrichs2018 - A data-entrained computational model for testing the regulatory logic of the vertebrate unfolded protein response
BIO0704 : Aguda1999 - G2 DNA damage checkpoint
BIO0705 : Smith2010 - Response of FOXO Transcription Factors to Post-Translational Modifications Made by Ageing-Related Signalling Pathways
BIO0706 : Smith2010 - Response of FOXO Transcription Factors to Post-Translational Modifications (with acetylation pathway)
BIO0707 : Revilla2003 - Controlling HIV infection using recombinant viruses
BIO0708 : Liu2017 - Dynamics of Avian Influenza with Logistic Growth
BIO0709 : Liu2017 - Dynamics of Avian Influenza with Allee Growth Effect
BIO0710 : Hernandez-Vargas2012 - Innate immune system dynamics to Influenza virus