JSim Biomodels Page
This page allows users to run curated models from the Biomodels Database under JSim. To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. Since these models do not specify simulation time length or delta, these must be set by the user before running the model.
Notes:
- Models on this page require JSim version 2.03 or higher.
- JSim does not yet support SBML events. Those models containing SBML events will show warnings in the translated MML source code.
- Updated curated EMBL-EBI Biomodels on 24, April 2019.
Return to complete JSim model archives.
Currently available curated models
- Number of models in this archive: 710
- Number of models currently runnable under JSim: 643
- Number of runnable models containing unsupported events: 130
Displaying 441 - 460 of 710
BIO0441 : Sarma2012 - Oscillations in MAPK cascade (S2)
BIO0442 : Sarma2012 - Oscillations in MAPK cascade (S2), inclusion of external signalling module
BIO0443 : Sarma2012 - Oscillations in MAPK cascade (S1n)
BIO0444 : Sarma2012 - Oscillations in MAPK cascade (S2n)
BIO0445 : Pokhilko2013 - TOC1 signalling in Arabidopsis circadian clock
BIO0446 : Erguler2013 - Unfolded protein stress response
BIO0447 : Venkatraman2012 - Interplay between PLS and TSP1 in TGF-β1 activation
BIO0448 : Brännmark2013 - Insulin signalling in human adipocytes (normal condition)
BIO0449 : Brännmark2013 - Insulin signalling in human adipocytes (diabetic condition)
BIO0450 : Reyes-Palomares2012 - a combined model hepatic polyamine and sulfur aminoacid metabolism - version2
BIO0451 : Carbo2013 - Cytokine driven CD4+ T Cell differentiation and phenotype plasticity
BIO0452 : Bidkhori2012 - normal EGFR signalling
BIO0453 : Bidkhori2012 - EGFR signalling in NSCLC
BIO0454 : Smallbone2013 - Metabolic Control Analysis - Example 1
BIO0455 : Smallbone2013 - Metabolic Control Analysis - Example 2
BIO0456 : Smallbone2013 - Metabolic Control Analysis - Example 3
BIO0457 : Firczuk2013 - Eukaryotic mRNA translation machinery
- BIOMD0000000457: [JSim version not yet available]
BIO0458 : Smallbone2013 - Serine biosynthesis
BIO0459 : Liebal2012 - B.subtilis post-transcriptional instability model
BIO0460 : Liebal2012 - B.subtilis sigB proteolysis model